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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
468 by jkleman
Sat, 2018-04-14 10:55
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
468 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
470 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
473 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
474 by smlewis
Mon, 2018-03-12 09:57
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
482 by Loki01
Wed, 2017-12-13 05:27
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
482 by rmoretti
Thu, 2018-06-28 14:28
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
484 by rmoretti
Mon, 2018-02-05 15:44
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
489 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
497 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
502 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
503 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Incorporating Rosetta Binary and Database to a Web Server Pipeline
by smkim » Fri, 2018-09-28 20:35
1
507 by rmoretti
Fri, 2018-11-09 12:22
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
510 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
514 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
515 by fmerino
Mon, 2017-10-16 04:02
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
516 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
524 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
526 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
536 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
538 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
542 by sheehajh
Thu, 2018-02-08 21:18
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
542 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
550 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
551 by rmoretti
Sat, 2017-12-02 10:22
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
1
555 by smlewis
Fri, 2017-09-08 11:05
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
557 by smlewis
Mon, 2018-04-16 16:32
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
560 by rmoretti
Tue, 2017-03-28 09:02
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
564 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
570 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
572 by SergeyP
Mon, 2018-11-12 09:19
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
572 by smlewis
Mon, 2018-12-31 08:58
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
1
577 by smlewis
Wed, 2018-05-30 11:15
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
579 by smlewis
Wed, 2017-06-28 06:59
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
580 by aneamtu
Mon, 2018-01-08 23:49
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
584 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
586 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
589 by smlewis
Wed, 2018-04-18 19:03
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
590 by smlewis
Wed, 2018-04-04 10:42
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
598 by smlewis
Wed, 2017-03-22 14:02
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
603 by asbelx
Thu, 2018-04-26 00:23
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
609 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
613 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
619 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
621 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
621 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
2
638 by rmoretti
Mon, 2018-01-15 14:23
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
649 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
660 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
663 by ac.research
Fri, 2017-08-18 00:53
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
666 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
670 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
680 by possu
Tue, 2016-08-30 16:57
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
681 by htorres
Mon, 2018-02-05 06:53
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
683 by rmoretti
Fri, 2018-08-03 11:39
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
686 by smlewis
Wed, 2016-08-24 07:23
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
690 by rmoretti
Tue, 2016-07-12 08:48
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
691 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
700 by smlewis
Mon, 2016-08-22 10:39
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
706 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
713 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
716 by rmoretti
Wed, 2018-11-21 14:11
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
720 by rmoretti
Mon, 2017-10-30 12:02
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
723 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
727 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
731 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
735 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
738 by Karol
Mon, 2016-08-29 05:27
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
738 by ssrb
Tue, 2018-03-06 14:15
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
740 by renedominik
Sat, 2018-07-07 03:03
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
741 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
742 by DanielK
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
745 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
745 by ylwang
Wed, 2018-11-14 03:03
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
749 by albumns
Mon, 2014-04-21 06:47
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
755 by ela
Thu, 2018-08-09 08:04
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
756 by tricia
Mon, 2014-04-21 06:47
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
756 by MA
Thu, 2017-04-27 18:53
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
756 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
760 by rmoretti
Thu, 2016-09-08 07:56
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
760 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
760 by rmoretti
Mon, 2017-05-15 09:03
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
772 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
773 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
774 by smlewis
Sun, 2016-03-13 15:25
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
778 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
783 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
786 by lah435
Mon, 2017-04-03 19:50
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
787 by justin
Mon, 2014-04-21 06:47
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
788 by ctaylor
Mon, 2014-04-21 06:47
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
790 by smlewis
Thu, 2016-08-11 13:16
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
791 by ssrb
Tue, 2016-07-12 10:02
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
792 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
796 by matteoferla
Mon, 2018-02-26 02:05
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
797 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
797 by renedominik
Mon, 2018-06-04 00:04
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
799 by IgaK
Mon, 2014-04-21 06:47
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
801 by myang
Mon, 2014-04-21 06:47
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
802 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
804 by SenyorDrew
Thu, 2017-07-06 07:48
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