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Rosetta 3 - General

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Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
454 by fmerino
Mon, 2017-10-16 04:02
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
460 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
461 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
464 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
474 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
475 by rmoretti
Sat, 2017-12-02 10:22
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
476 by sheehajh
Thu, 2018-02-08 21:18
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
1
479 by smlewis
Wed, 2018-05-30 11:15
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
480 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
481 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
1
489 by smlewis
Fri, 2017-09-08 11:05
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
500 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
504 by rmoretti
Tue, 2017-03-28 09:02
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
506 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
507 by smlewis
Wed, 2018-04-18 19:03
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
509 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
510 by aneamtu
Mon, 2018-01-08 23:49
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
512 by smlewis
Wed, 2018-04-04 10:42
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
513 by asbelx
Thu, 2018-04-26 00:23
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
519 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
519 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
521 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
522 by smlewis
Wed, 2017-06-28 06:59
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
2
537 by rmoretti
Mon, 2018-01-15 14:23
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
539 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
540 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
547 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
550 by smlewis
Wed, 2017-03-22 14:02
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
558 by rmoretti
Fri, 2018-08-03 11:39
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
571 by rmoretti
Wed, 2018-11-21 14:11
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
572 by renedominik
Sat, 2018-07-07 03:03
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
582 by htorres
Mon, 2018-02-05 06:53
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
585 by ela
Thu, 2018-08-09 08:04
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
606 by ac.research
Fri, 2017-08-18 00:53
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
607 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
613 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
621 by rmoretti
Thu, 2016-04-28 14:47
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
634 by smlewis
Wed, 2016-08-24 07:23
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
635 by possu
Tue, 2016-08-30 16:57
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
639 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
646 by ssrb
Tue, 2018-03-06 14:15
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
650 by smlewis
Mon, 2016-08-22 10:39
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
650 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
651 by ylwang
Wed, 2018-11-14 03:03
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
652 by rmoretti
Wed, 2016-06-29 10:20
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
653 by rmoretti
Tue, 2016-07-12 08:48
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
655 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
655 by rmoretti
Fri, 2017-04-14 08:37
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
655 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
663 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
665 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
670 by Karol
Mon, 2016-08-29 05:27
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
673 by salvatta
Mon, 2018-09-10 10:04
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
674 by renedominik
Mon, 2018-06-04 00:04
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
679 by rmoretti
Tue, 2018-01-30 09:08
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
680 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
681 by rmoretti
Wed, 2016-06-15 16:06
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
683 by rmoretti
Mon, 2017-05-15 09:03
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
684 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
686 by matteoferla
Mon, 2018-02-26 02:05
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
688 by smlewis
Wed, 2018-04-11 11:45
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
694 by rmoretti
Thu, 2016-04-28 15:57
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
702 by MA
Thu, 2017-04-27 18:53
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
705 by rmoretti
Thu, 2018-06-28 14:09
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
709 by smlewis
Tue, 2018-07-03 11:22
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
710 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
714 by DanielK
Mon, 2014-04-21 06:47
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
716 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
717 by albumns
Mon, 2014-04-21 06:47
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
722 by rmoretti
Thu, 2016-09-08 07:56
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
724 by smlewis
Tue, 2018-06-12 10:54
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
727 by smlewis
Sun, 2016-03-13 15:25
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
729 by lah435
Mon, 2017-04-03 19:50
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
731 by tricia
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
734 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
741 by lanselibai
Sun, 2014-11-16 10:44
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
742 by smlewis
Thu, 2016-08-11 13:16
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
743 by ssrb
Tue, 2016-07-12 10:02
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
751 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
752 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
755 by vmulligan
Thu, 2017-04-27 16:41
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
756 by justin
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
756 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
758 by ctaylor
Mon, 2014-04-21 06:47
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
767 by smlewis
Sun, 2016-01-10 10:02
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
769 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
771 by IgaK
Mon, 2014-04-21 06:47
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
771 by ac.research
Fri, 2017-03-31 07:36
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
776 by myang
Mon, 2014-04-21 06:47
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
778 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
779 by everyday847
Tue, 2017-11-28 13:07
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
780 by rmoretti
Sat, 2015-09-19 13:20
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
781 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
783 by rmoretti
Fri, 2016-04-08 08:43
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
783 by exchhattu
Mon, 2014-04-21 06:47
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
788 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
790 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
793 by rmoretti
Mon, 2017-11-06 07:36
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
794 by SergeyP
Fri, 2017-03-10 11:16
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
794 by rmoretti
Thu, 2015-08-06 09:28
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