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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
480 by rmoretti
Wed, 2019-09-18 10:49
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
480 by rmoretti
Mon, 2019-07-08 08:05
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
0
482 by bio_james
Wed, 2017-12-13 09:13
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
488 by ac.research
Mon, 2018-05-14 08:27
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
493 by rmoretti
Sat, 2019-03-30 12:10
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
495 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
497 by ac.research
Fri, 2020-02-14 23:33
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
498 by ipetrik_ambry
Wed, 2017-12-06 13:11
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
500 by rmoretti
Mon, 2019-08-26 15:01
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
501 by rmoretti
Tue, 2019-07-09 15:48
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
501 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
0
504 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
507 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
0
508 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
513 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
514 by connyyu
Thu, 2019-04-18 03:26
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
514 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
515 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
515 by vmulligan
Mon, 2019-04-08 14:49
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
516 by rmoretti
Wed, 2019-04-03 10:03
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
518 by sayan500
Tue, 2019-07-30 22:20
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
523 by matteoferla
Tue, 2020-08-11 10:00
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
528 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
540 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
545 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
549 by rmoretti
Wed, 2019-04-03 09:31
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
568 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
576 by smlewis
Wed, 2019-12-04 13:07
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
589 by matteoferla
Wed, 2019-08-21 11:58
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
592 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
593 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
594 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
595 by vmulligan
Tue, 2019-03-26 11:30
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
602 by jferrie
Mon, 2018-04-23 15:25
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
603 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
605 by a.book
Wed, 2018-10-03 15:56
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
606 by David
Tue, 2019-01-22 12:23
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
618 by rmoretti
Wed, 2018-11-21 14:14
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
622 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
623 by smlewis
Thu, 2018-06-28 13:34
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
625 by rmoretti
Wed, 2018-11-21 14:01
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
637 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
639 by jalan
Sun, 2020-04-12 08:01
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
648 by rmoretti
Thu, 2018-06-28 14:22
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
650 by ylwang
Sat, 2019-11-23 06:26
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
652 by rmoretti
Thu, 2018-02-22 09:29
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
653 by denatured
Fri, 2019-12-13 11:19
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
655 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
655 by Jhreed
Fri, 2016-07-08 13:44
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
659 by ac.research
Sat, 2017-11-18 06:54
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
661 by rmoretti
Mon, 2018-02-12 09:39
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
667 by nleroy
Fri, 2019-11-08 12:44
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
1
668 by LWilliamson
Sun, 2020-05-17 15:36
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
673 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
676 by smlewis
Tue, 2018-08-07 16:59
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
682 by rmoretti
Wed, 2019-04-03 09:58
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
682 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
693 by rmoretti
Mon, 2018-03-19 09:08
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
700 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
704 by mao_x
Thu, 2019-08-08 01:37
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
707 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
710 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
711 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
714 by matteoferla
Thu, 2019-08-22 05:39
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
715 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
717 by jyy
Mon, 2020-01-13 17:19
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
721 by rmoretti
Wed, 2017-09-06 08:47
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
722 by Loki01
Wed, 2017-12-13 05:27
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
731 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
739 by ylwang
Tue, 2019-10-08 18:34
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
742 by rmoretti
Fri, 2018-08-03 08:59
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
743 by matteoferla
Thu, 2018-09-13 06:21
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
746 by smlewis
Tue, 2018-06-19 10:31
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
748 by fmerino
Mon, 2017-10-16 04:02
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
748 by matteoferla
Sat, 2020-03-21 09:14
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
754 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
759 by jkleman
Sat, 2018-04-14 10:55
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
772 by rmoretti
Mon, 2018-02-05 15:44
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
782 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
790 by Kazu
Mon, 2020-05-18 10:52
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
795 by jkleman
Tue, 2018-07-31 13:19
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
810 by rmoretti
Tue, 2017-03-28 09:02
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
814 by brspurri
Thu, 2020-08-20 13:22
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
816 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
825 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
826 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
831 by matteoferla
Sat, 2020-09-12 03:02
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
833 by orionshih
Tue, 2018-05-01 21:16
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
842 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Incorporating Rosetta Binary and Database to a Web Server Pipeline
by smkim » Fri, 2018-09-28 20:35
1
847 by rmoretti
Fri, 2018-11-09 12:22
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
850 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
852 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
855 by matteoferla
Mon, 2019-12-23 07:24
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
859 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
862 by smlewis
Wed, 2017-03-22 14:02
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
865 by smlewis
Mon, 2018-03-12 09:57
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
867 by rmoretti
Sat, 2019-03-30 12:12
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
1
872 by smlewis
Fri, 2017-09-08 11:05
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
873 by matteoferla
Wed, 2019-11-20 02:32
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
881 by rmoretti
Sat, 2017-12-02 10:22
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