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Rosetta 3 - General

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Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,275 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
1,108 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
1,582 by rmoretti
Mon, 2018-01-15 15:24
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
188 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
117 by haom
Wed, 2020-09-09 09:19
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
1,245 by ac.research
Sat, 2019-08-03 08:12
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
460 by ac.research
Mon, 2018-05-14 08:27
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
5,099 by rmoretti
Thu, 2016-04-28 15:53
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
1,916 by ndousis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
3,762 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
2,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
6,265 by jtmacd
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
3,120 by jtmacd
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
1,873 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
572 by David
Tue, 2019-01-22 12:23
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,944 by rmoretti
Fri, 2015-07-03 13:24
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
1,825 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
1,563 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
165 by JW_24
Wed, 2020-09-23 01:27
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
1,222 by rmoretti
Fri, 2018-08-03 11:39
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
1,978 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
4,277 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
2,708 by Karol
Thu, 2016-12-15 01:35
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
3
2,279 by sk0319
Thu, 2017-01-05 17:07
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
3,138 by glemmon
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
2,847 by gw
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,602 by pachecoj
Tue, 2014-11-11 19:30
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
2,775 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
2,327 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,289 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
633 by Jhreed
Fri, 2016-07-08 13:44
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,017 by tevang
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
2,552 by cneale
Fri, 2014-03-21 18:13
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
0
211 by rohi
Mon, 2020-09-07 15:24
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,120 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,434 by gerdos
Fri, 2015-10-16 03:01
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,443 by exchhattu
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,033 by sumukh21
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
281 by matteoferla
Sun, 2020-03-22 05:29
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
4,226 by smlewis
Mon, 2014-04-21 06:47
Hot topic SCons compilation error (Windows XP, 32bit)
by CRickert » Mon, 2009-08-03 00:57
28
12,744 by Marsia
Mon, 2014-04-21 06:47
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
1,398 by mmarlett
Thu, 2016-06-16 07:06
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,447 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
61 by rmoretti
Tue, 2020-10-13 11:40
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
2,657 by rmoretti
Mon, 2014-04-21 06:48
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,520 by rmoretti
Thu, 2015-04-02 12:52
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
1,525 by everyday847
Tue, 2017-11-28 13:07
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,285 by Trentage
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
3,288 by aroop
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,128 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
3,431 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
1,225 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
332 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
751 by matteoferla
Mon, 2019-12-23 07:24
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
2,654 by smlewis
Mon, 2014-04-21 06:47
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
1,730 by smlewis
Wed, 2018-03-21 08:42
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,243 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
3,215 by Sandy
Fri, 2015-08-07 15:49
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
937 by smlewis
Mon, 2018-04-16 16:32
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
1,387 by smlewis
Wed, 2018-04-11 11:45
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
328 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
1,763 by rmoretti
Mon, 2014-04-21 06:47
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
1,625 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,806 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
252 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,128 by rmoretti
Thu, 2016-04-28 15:49
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
930 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
2,573 by smlewis
Wed, 2016-07-13 23:41
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
1,847 by smlewis
Mon, 2014-04-21 06:47
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
182 by Kazu
Wed, 2020-05-20 11:58
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
2,761 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
5,619 by qlj
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,889 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
1,839 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
2,245 by gipsonb
Mon, 2014-04-21 06:47
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
191 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
1,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
3,606 by Ashafix
Wed, 2014-02-19 06:53
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
685 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
1,585 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,396 by smlewis
Mon, 2014-04-21 06:47
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
1,493 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
481 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
2,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
2,236 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
854 by smlewis
Wed, 2017-06-28 06:59
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
2,052 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,902 by kalabharath
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50
30
16,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
2,342 by smlewis
Mon, 2014-04-21 06:47
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,220 by rmoretti
Tue, 2016-07-12 08:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,550 by smlewis
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
9,594 by tevang
Mon, 2014-04-21 06:47
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
218 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,430 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
2,410 by jcsaborio
Mon, 2014-04-21 06:47
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