You are here

Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,436 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
2,430 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
158 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
3,077 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
1,127 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
692 by nzsuzsanna
Tue, 2016-05-10 07:39
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
11,714 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
5,824 by rmoretti
Mon, 2016-05-09 09:23
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
2,157 by zharmad
Mon, 2014-04-21 06:47
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
911 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
4
2,533 by tylerborrman
Tue, 2015-11-24 13:52
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
3,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
2,767 by IAndre
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,066 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,400 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,145 by IAndre
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,067 by doranhen
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
2,550 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
2,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
1,746 by smlewis
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
5,826 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
4,450 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
10,270 by rmoretti
Mon, 2014-04-21 06:48
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
892 by rmoretti
Tue, 2016-07-12 08:48
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
1,643 by doranhen
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
844 by rmoretti
Sat, 2018-03-17 10:43
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
1,058 by asbelx
Thu, 2018-04-26 00:23
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
5,397 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,294 by jrcf
Fri, 2015-10-16 10:57
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
2,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,172 by rmoretti
Fri, 2015-07-03 13:14
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
1,550 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
555 by rmoretti
Tue, 2019-07-09 15:57
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
1,698 by rmoretti
Mon, 2018-01-15 15:34
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
2,115 by ac.research
Mon, 2017-09-04 16:43
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
2,687 by vmulligan
Thu, 2020-07-16 23:31
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
971 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
4,360 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
899 by rmoretti
Thu, 2018-06-28 14:28
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,320 by alejandro
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
2,820 by einew
Mon, 2014-04-21 06:47
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
3,590 by Anonymous
Mon, 2014-04-21 06:47
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
998 by rohi
Sun, 2020-07-26 17:03
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
2,277 by rmoretti
Thu, 2017-08-03 09:01
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
1,329 by frichter
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
2,630 by cheyuk
Sun, 2015-09-20 02:08
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
423 by rmoretti
Mon, 2019-08-26 14:52
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
814 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,082 by rmoretti
Tue, 2015-10-27 08:46
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
4,748 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
1,195 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,420 by rmoretti
Mon, 2014-04-21 06:47
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
2,691 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI
by linucks » Tue, 2018-02-13 03:41
4
1,583 by linucks
Fri, 2018-02-23 08:08
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
2,658 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
147 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
3,627 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
2,949 by rmoretti
Mon, 2015-03-30 14:43
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
325 by matteoferla
Tue, 2020-04-14 03:36
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
4,011 by einew
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,389 by Al52
Tue, 2015-12-01 18:22
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
5,270 by ndousis
Mon, 2014-04-21 06:47
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49
7
5,701 by moehle
Mon, 2014-04-21 06:47
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
2,514 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
7,201 by jurkm
Mon, 2014-04-21 06:47
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,278 by jurkm
Mon, 2014-04-21 06:47
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
67 by rohi
Thu, 2020-10-15 10:28
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
832 by smlewis
Wed, 2017-03-22 14:02
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
2,081 by scombs
Mon, 2014-04-21 06:47
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
1,090 by htorres
Mon, 2018-02-05 06:53
Normal topic Using Patches in Rosetta
by JS » Wed, 2010-03-10 13:32
6
5,061 by JS
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
1,783 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
5,109 by dgront
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
2,458 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
6,483 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
932 by IgaK
Mon, 2014-04-21 06:47
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
1,645 by louisclark
Mon, 2014-04-21 06:47
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
1,555 by smlewis
Thu, 2016-06-30 08:44
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
178 by jmaly
Wed, 2020-09-02 16:16
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
5,296 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
3,372 by rmoretti
Tue, 2015-11-10 11:52
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,839 by cossio
Wed, 2014-12-03 14:51
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
1,916 by rmoretti
Mon, 2014-09-29 13:45
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
4,643 by lanselibai
Mon, 2014-09-22 08:13
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
7,774 by Lindsay
Mon, 2014-04-21 06:47
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
348 by matteoferla
Wed, 2020-01-01 04:30
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
458 by matteoferla
Wed, 2020-01-29 12:18
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
1,934 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
1,579 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
0
467 by bio_james
Wed, 2017-12-13 09:13
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
3,714 by smlewis
Tue, 2017-08-29 08:56
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
1,723 by jarod
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
2,843 by cossio
Thu, 2014-12-04 05:41
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,912 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
2,247 by smlewis
Mon, 2014-04-21 06:47
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
3,607 by rmoretti
Fri, 2014-03-28 09:03
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
4,692 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
2,728 by smlewis
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General