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Rosetta 3 - General
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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4,485 |
by albumns Mon, 2014-04-21 06:47 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
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4,486 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
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4,489 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
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4,491 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
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4,493 |
by IAndre Mon, 2014-04-21 06:47 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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4,513 |
by jwillis Sat, 2015-02-07 20:40 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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4,516 |
by knutjbj Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
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4,519 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
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4,528 |
by smlewis Mon, 2014-04-21 06:47 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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4,533 |
by jadolfbr Mon, 2014-04-21 21:05 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
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4,539 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
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4,565 |
by dgront Mon, 2014-04-21 06:47 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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4,579 |
by ac.research Mon, 2017-09-04 16:43 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,587 |
by smlewis Tue, 2018-07-03 11:22 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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4,594 |
by zaldini Fri, 2015-01-02 05:38 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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4,628 |
by zaldini Wed, 2015-01-07 20:35 |
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solvation by gw » Wed, 2011-08-31 17:14 |
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4,640 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
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4,643 |
by renedominik Mon, 2014-04-21 06:47 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
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4,657 |
by phanvy Thu, 2014-10-16 18:54 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
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4,659 |
by smlewis Mon, 2014-04-21 06:47 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
3 |
4,664 |
by smlewis Wed, 2017-11-08 12:08 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,670 |
by saxen Mon, 2016-04-25 10:38 |
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Rosetta CM - Ignore Sporadic Errors by Swillard » Wed, 2018-06-13 05:47 |
6 |
4,671 |
by rmoretti Mon, 2018-11-12 14:29 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
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4,674 |
by smlewis Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
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4,676 |
by cheyuk Sun, 2015-09-20 02:08 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,688 |
by smlewis Mon, 2014-04-21 06:47 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
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4,692 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
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4,700 |
by w107kdk Mon, 2014-04-21 06:47 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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4,708 |
by lzx32 Mon, 2014-04-21 06:47 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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4,711 |
by rmoretti Tue, 2015-01-06 09:58 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
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4,711 |
by smlewis Wed, 2016-07-13 23:41 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
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4,716 |
by Lindsay Mon, 2014-04-21 06:48 |
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abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
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4,721 |
by smlewis Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,733 |
by pachecoj Wed, 2017-03-29 12:32 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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4,735 |
by pardave Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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4,740 |
by Martin Floor Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
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4,740 |
by gw Mon, 2014-04-21 06:47 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
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4,751 |
by matteoferla Wed, 2021-09-29 01:58 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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4,754 |
by smlewis Wed, 2018-03-21 08:42 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
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4,765 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
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4,799 |
by rmoretti Sat, 2014-03-22 11:40 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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4,804 |
by jadolfbr Tue, 2019-04-16 09:15 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
3 |
4,806 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
6 |
4,807 |
by rmoretti Mon, 2018-08-20 11:45 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
4,827 |
by lanselibai Tue, 2014-12-16 10:48 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
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4,833 |
by aneamtu Thu, 2018-01-18 00:56 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
5 |
4,837 |
by rmoretti Thu, 2017-08-03 09:01 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
5 |
4,839 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
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4,845 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
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4,856 |
by rmoretti Mon, 2014-04-21 06:47 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
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4,860 |
by smlewis Mon, 2014-04-21 06:47 |
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restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
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4,891 |
by rmoretti Thu, 2016-09-08 10:56 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
4,921 |
by rmoretti Wed, 2015-08-12 15:03 |
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how to get reliable results for carbohydrate docking? by albumns » Sun, 2010-09-05 23:12 |
3 |
4,925 |
by smlewis Mon, 2014-04-21 06:47 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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4,934 |
by rmoretti Mon, 2015-03-30 14:43 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
4,938 |
by jadolfbr Mon, 2014-04-21 06:47 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
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4,950 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
1 |
4,965 |
by rmoretti Mon, 2017-11-06 07:36 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
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4,979 |
by rmoretti Mon, 2014-04-21 06:47 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
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4,986 |
by smlewis Mon, 2014-04-21 06:47 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
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5,002 |
by w107kdk Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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5,005 |
by albumns Mon, 2014-04-21 06:47 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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5,008 |
by pachecoj Sat, 2014-08-09 06:33 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
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5,019 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
3 |
5,021 |
by nitroamos Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
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5,026 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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5,040 |
by rmoretti Mon, 2014-04-21 06:48 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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5,048 |
by cossio Thu, 2014-12-04 05:41 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
4 |
5,055 |
by jtmacd Mon, 2014-04-21 06:47 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
5 |
5,070 |
by salvatta Mon, 2018-09-10 10:04 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
3 |
5,076 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
5,077 |
by Ashafix Mon, 2014-04-21 06:48 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
3 |
5,081 |
by jurkm Mon, 2014-04-21 06:47 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
5,086 |
by smlewis Tue, 2016-08-30 13:47 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
5,103 |
by Sandy Fri, 2015-08-07 15:49 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
5,122 |
by smlewis Mon, 2014-04-21 06:47 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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5,135 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
5,156 |
by pepfolder Mon, 2014-04-21 06:47 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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5,175 |
by rpache Mon, 2014-04-21 06:47 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
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5,180 |
by smlewis Mon, 2014-04-21 06:47 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
1 |
5,180 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
8 |
5,192 |
by helenah Tue, 2020-11-03 04:33 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
5,197 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
6 |
5,222 |
by rmoretti Fri, 2018-08-24 11:59 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
5,244 |
by smlewis Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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5,251 |
by banshee Tue, 2016-04-26 00:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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5,256 |
by rmoretti Tue, 2014-11-18 10:01 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
5,263 |
by arthuc01 Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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5,325 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
5,336 |
by Ashafix Wed, 2014-02-19 06:53 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
5 |
5,342 |
by attesor Mon, 2014-04-21 06:47 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
5,342 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
5,348 |
by glemmon Mon, 2014-04-21 06:47 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
5,360 |
by smlewis Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,384 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,401 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
5,407 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
3 |
5,414 |
by pholland Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
5,416 |
by rosa Mon, 2014-04-21 06:48 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
5 |
5,416 |
by zeynep Mon, 2014-04-21 06:47 |
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