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Rosetta 3 - General
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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5,063 |
by salvatta Mon, 2018-09-10 10:04 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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4,130 |
by jadolfbr Mon, 2019-01-28 08:46 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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5,172 |
by rpache Mon, 2014-04-21 06:47 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,825 |
by everyday847 Mon, 2021-03-29 20:19 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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5,531 |
by rmoretti Sat, 2014-05-17 14:10 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
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4,998 |
by w107kdk Mon, 2014-04-21 06:47 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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3,089 |
by rmoretti Fri, 2020-11-06 08:04 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
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5,336 |
by attesor Mon, 2014-04-21 06:47 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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5,600 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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2,081 |
by matteoferla Fri, 2022-07-01 13:49 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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5,567 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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6,000 |
by smlewis Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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5,609 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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4,460 |
by Loki01 Thu, 2017-12-14 06:20 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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5,347 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,910 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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4,363 |
by smlewis Wed, 2017-08-16 08:30 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,703 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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5,998 |
by rmoretti Tue, 2021-02-09 11:52 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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5,080 |
by smlewis Tue, 2016-08-30 13:47 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
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4,739 |
by matteoferla Wed, 2021-09-29 01:58 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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2,169 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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5,724 |
by rmoretti Sat, 2015-04-25 10:05 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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5,254 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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4,832 |
by rmoretti Thu, 2017-08-03 09:01 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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4,744 |
by smlewis Wed, 2018-03-21 08:42 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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6,630 |
by einew Mon, 2014-04-21 06:47 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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5,006 |
by pachecoj Sat, 2014-08-09 06:33 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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7,859 |
by mahajanr Mon, 2014-04-21 06:47 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,581 |
by smlewis Tue, 2018-07-03 11:22 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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10,157 |
by jtmacd Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,638 |
by code_Monkey Thu, 2021-03-18 08:03 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
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4,931 |
by jadolfbr Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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5,246 |
by banshee Tue, 2016-04-26 00:47 |
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Problem with relaxing a PDB around a chemically bound ligand by drinker615 » Sat, 2024-04-06 16:04 |
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187 |
by drinker615 Tue, 2024-04-16 19:06 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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15,683 |
by nawsad Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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10,616 |
by dgront Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,916 |
by rmoretti Mon, 2014-04-21 06:48 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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5,527 |
by rmoretti Tue, 2015-05-05 14:31 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,967 |
by smlewis Tue, 2018-06-12 10:54 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,102 |
by rmoretti Thu, 2018-03-08 07:46 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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4,831 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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6,431 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,980 |
by doranhen Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,649 |
by matteoferla Wed, 2019-11-20 02:32 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,870 |
by xpzhang Mon, 2014-04-21 06:47 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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6,418 |
by rmoretti Thu, 2015-04-16 10:09 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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5,818 |
by linucks Wed, 2018-04-25 08:50 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
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5,402 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,938 |
by smlewis Wed, 2018-04-11 11:45 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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7,016 |
by smlewis Mon, 2014-04-21 06:48 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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5,131 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
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5,618 |
by aroop Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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7,862 |
by rmoretti Fri, 2015-07-03 14:02 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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5,470 |
by cannond Wed, 2017-03-08 03:00 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
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6,450 |
by smlewis Mon, 2014-04-21 06:47 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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4,797 |
by jadolfbr Tue, 2019-04-16 09:15 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
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5,413 |
by zeynep Mon, 2014-04-21 06:47 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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6,097 |
by obdulia Wed, 2016-07-13 09:11 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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7,860 |
by rlwoltz Mon, 2014-04-21 06:47 |
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setting timeout option in MPI run by syntekabio2019 » Mon, 2024-02-26 01:09 |
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375 |
by rmoretti Wed, 2024-02-28 09:20 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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8,094 |
by albumns Mon, 2014-04-21 06:47 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
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5,013 |
by smlewis Mon, 2014-04-21 06:47 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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6,704 |
by ssrb Tue, 2015-09-22 08:35 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
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7,981 |
by rmoretti Thu, 2016-04-28 15:53 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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8,579 |
by rmoretti Mon, 2017-08-14 09:06 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
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6,455 |
by rmoretti Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
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7,378 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
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4,380 |
by freedman Mon, 2017-03-06 13:24 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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7,165 |
by ritacc18 Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,729 |
by pachecoj Wed, 2017-03-29 12:32 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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6,588 |
by qlj Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,941 |
by MRH Mon, 2014-04-21 06:48 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
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6,160 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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1,649 |
by rmoretti Mon, 2023-02-20 16:07 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
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5,394 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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4,281 |
by jadolfbr Thu, 2020-09-24 10:04 |
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Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
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5,537 |
by weallen Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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7,197 |
by smlewis Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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8,236 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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5,001 |
by albumns Mon, 2014-04-21 06:47 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
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6,829 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
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7,251 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
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5,732 |
by Anonymous Mon, 2014-04-21 06:47 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
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4,802 |
by rmoretti Mon, 2018-08-20 11:45 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
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5,213 |
by rmoretti Fri, 2018-08-24 11:59 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
6 |
6,194 |
by robren Mon, 2014-04-21 06:47 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
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6,248 |
by jurkm Mon, 2014-04-21 06:47 |
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Rosetta CM - Ignore Sporadic Errors by Swillard » Wed, 2018-06-13 05:47 |
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4,661 |
by rmoretti Mon, 2018-11-12 14:29 |
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modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
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5,872 |
by jarod Mon, 2014-04-21 06:47 |
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Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
6 |
8,041 |
by jruhym Mon, 2014-04-21 06:47 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
6,532 |
by smlewis Mon, 2014-04-21 06:47 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
6 |
6,279 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
6 |
8,230 |
by JS Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
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11,494 |
by rmoretti Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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6,049 |
by Anonymous Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
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6,887 |
by smlewis Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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6,443 |
by rmoretti Fri, 2014-03-28 09:03 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
6 |
2,747 |
by rmoretti Thu, 2021-06-24 12:23 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
6 |
5,666 |
by biofisikx Mon, 2014-04-21 06:47 |
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