You are here

Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
1,517 by ssrb
Tue, 2022-07-05 11:07
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
3,265 by ndousis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
6,157 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
2,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
3,807 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
10,065 by jtmacd
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
5,012 by jtmacd
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,995 by David
Tue, 2019-01-22 12:23
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
3,175 by rmoretti
Fri, 2015-07-03 13:24
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
3,348 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,804 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
1,624 by JW_24
Wed, 2020-09-23 01:27
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
3,454 by rmoretti
Fri, 2018-08-03 11:39
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
0
498 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
3,078 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
7,622 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
5,522 by Karol
Thu, 2016-12-15 01:35
Normal topic rosie github log in
by YUANXU » Tue, 2023-04-25 20:13
1
469 by Sergey
Thu, 2023-04-27 12:03
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
5,912 by rmoretti
Tue, 2021-02-09 11:52
Normal topic Rotate chain
by Germanico » Sun, 2021-05-09 16:36
3
2,022 by danpf
Mon, 2021-05-10 10:04
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
5,306 by glemmon
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
4,706 by gw
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,852 by pachecoj
Tue, 2014-11-11 19:30
Normal topic Run protein-protein docking parallelly by mpi
by Zehui Zhou » Thu, 2023-02-02 06:23
3
950 by Zehui Zhou
Fri, 2023-02-03 05:51
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
4,345 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
2,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
6,099 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
2,248 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
1,285 by Jhreed
Fri, 2016-07-08 13:44
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,563 by tevang
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
4,243 by cneale
Fri, 2014-03-21 18:13
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,531 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
2,086 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,098 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,718 by gerdos
Fri, 2015-10-16 03:01
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
2,550 by exchhattu
Mon, 2014-04-21 06:47
Normal topic RuntimeError: CUDA out of memory.
by ravi.thakkar » Tue, 2023-03-07 00:27
2
752 by rmoretti
Tue, 2023-03-07 08:18
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,585 by sumukh21
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
1,005 by matteoferla
Sun, 2020-03-22 05:29
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
6,769 by smlewis
Mon, 2014-04-21 06:47
Normal topic Save silent results to individual directory by process ID
by Payne » Sat, 2022-09-24 05:23
3
1,054 by rmoretti
Thu, 2022-09-29 00:15
Hot topic SCons compilation error (Windows XP, 32bit)
by CRickert » Mon, 2009-08-03 00:57
28
24,901 by Marsia
Mon, 2014-04-21 06:47
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
1,108 by LanMei
Tue, 2022-03-22 20:45
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,651 by mmarlett
Thu, 2016-06-16 07:06
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,420 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Score function in protein-protein docking with constrains
by Zehui Zhou » Mon, 2023-02-06 03:31
2
909 by Zehui Zhou
Wed, 2023-02-15 05:40
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
1,396 by rmoretti
Tue, 2020-10-13 11:40
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
4,305 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
930 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,417 by rmoretti
Thu, 2015-04-02 12:52
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
3,894 by everyday847
Tue, 2017-11-28 13:07
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,916 by Trentage
Mon, 2014-04-21 06:47
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
0
325 by mrosam
Thu, 2023-05-25 05:14
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
5,550 by aroop
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,986 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
1,161 by rmoretti
Wed, 2021-07-14 07:07
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
5,854 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,682 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
924 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
2,955 by matteoferla
Mon, 2019-12-23 07:24
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,539 by smlewis
Mon, 2014-04-21 06:47
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
4,660 by smlewis
Wed, 2018-03-21 08:42
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
721 by Soler
Sat, 2021-11-20 23:41
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
2,204 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
1,436 by almeida85
Mon, 2021-02-08 09:50
Normal topic Segmentation Fault
by ileanexis » Mon, 2024-03-11 08:53
0
78 by ileanexis
Mon, 2024-03-11 08:53
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
5,048 by Sandy
Fri, 2015-08-07 15:49
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
2,008 by smlewis
Mon, 2018-04-16 16:32
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
762 by dkesar
Fri, 2021-06-04 19:09
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
3,878 by smlewis
Wed, 2018-04-11 11:45
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
0
405 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
4,050 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,867 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,246 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
687 by rmoretti
Wed, 2022-09-07 09:19
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
3,309 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,415 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,380 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic setting timeout option in MPI run
by syntekabio2019 » Mon, 2024-02-26 01:09
5
255 by rmoretti
Wed, 2024-02-28 09:20
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,116 by rmoretti
Thu, 2016-04-28 15:49
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
750 by ajasja
Mon, 2022-05-23 07:19
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,508 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,651 by smlewis
Wed, 2016-07-13 23:41
Normal topic Should all input structures to energy_based_clustering have an output pdb file?
by Brian Wiley » Mon, 2023-01-30 20:42
2
719 by Brian Wiley
Tue, 2023-01-31 19:08
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
3,450 by smlewis
Mon, 2014-04-21 06:47
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
1,186 by matteoferla
Thu, 2021-04-01 04:06
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
991 by Kazu
Wed, 2020-05-20 11:58
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
4,474 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
8,716 by qlj
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
4,643 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
3,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,775 by gipsonb
Mon, 2014-04-21 06:47
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,346 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,066 by smlewis
Mon, 2014-04-21 06:47
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
1,902 by rmoretti
Wed, 2021-03-17 13:52
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
5,292 by Ashafix
Wed, 2014-02-19 06:53
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,631 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,519 by smlewis
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General