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Rosetta 3 - General
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
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6,891 |
by smlewis Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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6,445 |
by rmoretti Fri, 2014-03-28 09:03 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
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2,754 |
by rmoretti Thu, 2021-06-24 12:23 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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6,491 |
by smlewis Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
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6,709 |
by smlewis Mon, 2014-04-21 06:47 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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4,140 |
by matteoferla Tue, 2020-08-11 10:00 |
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Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
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8,046 |
by jruhym Mon, 2014-04-21 06:47 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
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5,572 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDock - protonation states by LWilliamson » Tue, 2023-08-15 08:15 |
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1,274 |
by nannemdp Thu, 2023-08-24 08:21 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
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6,533 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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8,230 |
by JS Mon, 2014-04-21 06:47 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
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1,434 |
by rmoretti Tue, 2023-05-16 07:10 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
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6,131 |
by tevang Mon, 2014-04-21 06:47 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
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5,669 |
by biofisikx Mon, 2014-04-21 06:47 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
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6,360 |
by rmoretti Thu, 2016-04-28 16:15 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
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6,221 |
by Anonymous Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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9,846 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
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5,992 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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7,137 |
by smlewis Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
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8,784 |
by qlj Mon, 2014-04-21 06:47 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
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6,769 |
by G Mustafa Fri, 2021-09-10 01:16 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
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6,099 |
by fukamitka Mon, 2014-04-21 06:48 |
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Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
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5,539 |
by weallen Mon, 2014-04-21 06:47 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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5,736 |
by rmoretti Thu, 2016-04-28 15:19 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
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4,337 |
by Jacky010 Tue, 2019-05-14 01:24 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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7,663 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
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6,625 |
by doranhen Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
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9,381 |
by rmoretti Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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9,217 |
by Lindsay Mon, 2014-04-21 06:47 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
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2,566 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
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7,827 |
by jurkm Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
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8,845 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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9,338 |
by smlewis Mon, 2014-04-21 06:47 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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7,776 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
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6,345 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
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8,032 |
by rmoretti Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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9,050 |
by smlewis Mon, 2014-04-21 06:47 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
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8,877 |
by rmoretti Mon, 2014-04-21 06:47 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
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6,797 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
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7,944 |
by rmoretti Tue, 2015-10-27 09:11 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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8,502 |
by rmoretti Wed, 2015-01-21 08:43 |
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Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
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7,719 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
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6,881 |
by smlewis Mon, 2014-04-21 06:47 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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6,949 |
by shadrinams Mon, 2018-02-12 11:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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6,562 |
by krdav Wed, 2016-08-17 12:57 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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10,517 |
by smlewis Mon, 2014-04-21 06:47 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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10,421 |
by rmoretti Mon, 2014-04-21 06:47 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
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6,867 |
by rmoretti Thu, 2016-02-04 09:29 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
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6,750 |
by rosa Mon, 2014-04-21 06:48 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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7,365 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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8,572 |
by moehle Mon, 2014-04-21 06:47 |
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Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
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7,347 |
by JuliusSu Wed, 2014-03-19 20:38 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
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6,145 |
by sunhwan Mon, 2017-02-27 11:02 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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6,963 |
by Anonymous Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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6,514 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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11,835 |
by smlewis Mon, 2014-04-21 06:47 |
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rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
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7,085 |
by exchhattu Mon, 2014-04-21 06:47 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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8,057 |
by Lindsay Mon, 2014-04-21 06:47 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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9,981 |
by rmoretti Mon, 2014-04-21 06:48 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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16,867 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
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7,724 |
by rmoretti Mon, 2014-04-21 06:48 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
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6,588 |
by jtmacd Mon, 2014-04-21 06:47 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
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7,964 |
by jrcf Wed, 2016-03-23 12:16 |
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building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
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7,577 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Rosetta3 Tutorials by smlewis » Fri, 2011-11-18 07:33 |
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17,421 |
by rmoretti Tue, 2019-07-09 10:24 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
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1,803 |
by rmoretti Thu, 2023-02-16 13:48 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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5,798 |
by ac.research Mon, 2020-02-10 08:19 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
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8,378 |
by sacch Mon, 2014-04-21 06:47 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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8,324 |
by rmoretti Mon, 2014-11-03 16:30 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
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9,916 |
by smlewis Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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8,388 |
by smlewis Mon, 2014-04-21 06:47 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
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10,027 |
by rmoretti Mon, 2016-05-09 09:23 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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10,629 |
by rmoretti Tue, 2019-07-09 12:50 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
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7,351 |
by sk0319 Wed, 2017-01-11 10:52 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
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5,184 |
by helenah Tue, 2020-11-03 04:33 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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8,734 |
by ndousis Mon, 2014-04-21 06:47 |
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Resfile by vijayaraj81 » Thu, 2014-02-27 01:14 |
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8,970 |
by vijayaraj81 Tue, 2014-03-04 05:07 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
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6,443 |
by smlewis Sun, 2017-01-15 18:14 |
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Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
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8,960 |
by ac.research Mon, 2018-05-14 10:20 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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9,256 |
by arthuc01 Mon, 2014-04-21 06:47 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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10,789 |
by lanselibai Wed, 2014-10-15 01:41 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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9,123 |
by rmoretti Mon, 2015-06-01 15:27 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
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9,507 |
by Lindsay Mon, 2014-04-21 06:47 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
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10,551 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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11,346 |
by rmoretti Thu, 2015-04-30 16:25 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
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11,965 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
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6,201 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
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9,349 |
by wangyr Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
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9,555 |
by jamsmad Mon, 2014-04-21 06:47 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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8,638 |
by rmoretti Wed, 2014-09-24 09:57 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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9,117 |
by attesor Fri, 2014-10-31 04:49 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
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8,721 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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8,338 |
by albumns Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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11,225 |
by tianbu Mon, 2014-02-17 03:36 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
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8,290 |
by smlewis Tue, 2018-06-19 09:28 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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9,782 |
by rmoretti Thu, 2017-02-02 08:32 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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9,219 |
by smlewis Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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10,007 |
by brspurri Mon, 2014-04-21 06:47 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
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8,858 |
by smlewis Mon, 2014-04-21 06:47 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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13,158 |
by lanselibai Tue, 2015-02-10 14:03 |
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