You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
6 |
6,835 |
by smlewis Mon, 2014-04-21 06:47 |
|
Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
7 |
6,868 |
by rmoretti Thu, 2016-02-04 09:29 |
|
Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
7 |
6,881 |
by smlewis Mon, 2014-04-21 06:47 |
|
mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
6,895 |
by smlewis Mon, 2014-04-21 06:47 |
|
I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
6,915 |
by rmoretti Mon, 2014-04-21 06:47 |
|
log files by shadrinams » Fri, 2018-01-26 07:29 |
7 |
6,955 |
by shadrinams Mon, 2018-02-12 11:47 |
|
How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
7 |
6,964 |
by Anonymous Mon, 2014-04-21 06:47 |
|
defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
7,018 |
by smlewis Mon, 2014-04-21 06:48 |
|
What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
2 |
7,072 |
by lanselibai Mon, 2014-09-22 08:13 |
|
rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
7 |
7,089 |
by exchhattu Mon, 2014-04-21 06:47 |
|
How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
6 |
7,139 |
by smlewis Mon, 2014-04-21 06:47 |
|
cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
7,168 |
by ritacc18 Mon, 2014-04-21 06:47 |
|
What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
7,206 |
by smlewis Mon, 2014-04-21 06:47 |
|
pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
6 |
7,257 |
by smlewis Mon, 2014-04-21 06:47 |
|
Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
7,310 |
by ac.research Fri, 2017-08-18 00:57 |
|
Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
7 |
7,351 |
by JuliusSu Wed, 2014-03-19 20:38 |
|
Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
7,355 |
by sk0319 Wed, 2017-01-11 10:52 |
|
A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
7 |
7,368 |
by masterofpuppets Fri, 2014-12-19 08:30 |
|
extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
7,380 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
7,384 |
by Filipe Mon, 2014-04-21 06:47 |
|
This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
6 |
7,448 |
by vmulligan Thu, 2020-07-16 23:31 |
|
Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
7,516 |
by dgront Mon, 2014-04-21 06:47 |
|
building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
8 |
7,582 |
by gsmurphy Mon, 2014-04-21 06:47 |
|
Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
6 |
7,645 |
by tigerous Mon, 2014-04-21 06:47 |
|
AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
6 |
7,664 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
7 |
7,721 |
by smlewis Mon, 2014-04-21 06:47 |
|
RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
7,728 |
by rmoretti Mon, 2014-04-21 06:48 |
|
cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
7 |
7,777 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
7 |
7,829 |
by jurkm Mon, 2014-04-21 06:47 |
|
uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,865 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
5 |
7,869 |
by rmoretti Fri, 2015-07-03 14:02 |
|
ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
7,870 |
by rmoretti Tue, 2019-07-09 10:29 |
|
Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
5 |
7,871 |
by mahajanr Mon, 2014-04-21 06:47 |
|
Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
7 |
7,945 |
by rmoretti Tue, 2015-10-27 09:11 |
|
Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
7,969 |
by jrcf Wed, 2016-03-23 12:16 |
|
RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
5 |
7,984 |
by rmoretti Thu, 2016-04-28 15:53 |
|
Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
7 |
8,035 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
6 |
8,055 |
by jruhym Mon, 2014-04-21 06:47 |
|
how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
7 |
8,058 |
by Lindsay Mon, 2014-04-21 06:47 |
|
type of docking by rohi » Mon, 2020-07-06 06:55 |
11 |
8,063 |
by rohi Sun, 2020-07-26 17:03 |
|
ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
5 |
8,094 |
by albumns Mon, 2014-04-21 06:47 |
|
Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
10 |
8,179 |
by jiongzhang Mon, 2014-04-21 06:47 |
|
Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
6 |
8,232 |
by JS Mon, 2014-04-21 06:47 |
|
The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
8,241 |
by Jacob-kong Mon, 2014-04-21 06:47 |
|
ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
8,302 |
by smlewis Tue, 2018-06-19 09:28 |
|
Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
8 |
8,326 |
by rmoretti Mon, 2014-11-03 16:30 |
|
is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
9 |
8,339 |
by albumns Mon, 2014-04-21 06:47 |
|
Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
8 |
8,384 |
by sacch Mon, 2014-04-21 06:47 |
|
kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
8 |
8,396 |
by smlewis Mon, 2014-04-21 06:47 |
|
What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
11 |
8,423 |
by smlewis Tue, 2017-08-29 08:56 |
|
Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
7 |
8,505 |
by rmoretti Wed, 2015-01-21 08:43 |
|
Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
7 |
8,577 |
by moehle Mon, 2014-04-21 06:47 |
|
De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
5 |
8,585 |
by rmoretti Mon, 2017-08-14 09:06 |
|
Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
9 |
8,652 |
by rmoretti Wed, 2014-09-24 09:57 |
|
InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
11 |
8,658 |
by SenyorDrew Wed, 2019-06-12 14:10 |
|
Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
9 |
8,721 |
by bharat_46010 Mon, 2014-04-21 06:47 |
|
using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
8 |
8,736 |
by ndousis Mon, 2014-04-21 06:47 |
|
side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
8,784 |
by qlj Mon, 2014-04-21 06:47 |
|
ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
7 |
8,848 |
by smlewis Mon, 2014-04-21 06:47 |
|
pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
8,863 |
by smlewis Mon, 2014-04-21 06:47 |
|
Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
8,871 |
by xpzhang Mon, 2014-04-21 06:47 |
|
Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
7 |
8,878 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
9 |
8,965 |
by ac.research Mon, 2018-05-14 10:20 |
|
Resfile by vijayaraj81 » Thu, 2014-02-27 01:14 |
8 |
8,973 |
by vijayaraj81 Tue, 2014-03-04 05:07 |
|
ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
13 |
9,025 |
by brandon.frenz Thu, 2018-03-08 09:28 |
|
Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
7 |
9,051 |
by smlewis Mon, 2014-04-21 06:47 |
|
acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
9,091 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
9 |
9,127 |
by rmoretti Mon, 2015-06-01 15:27 |
|
input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
9 |
9,129 |
by attesor Fri, 2014-10-31 04:49 |
|
hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
7 |
9,221 |
by Lindsay Mon, 2014-04-21 06:47 |
|
what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
10 |
9,228 |
by smlewis Mon, 2014-04-21 06:47 |
|
How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
9 |
9,259 |
by arthuc01 Mon, 2014-04-21 06:47 |
|
How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
7 |
9,343 |
by smlewis Mon, 2014-04-21 06:47 |
|
Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
9 |
9,352 |
by wangyr Mon, 2014-04-21 06:47 |
|
error during docking by zhisheng » Thu, 2012-02-02 12:10 |
10 |
9,368 |
by smlewis Mon, 2014-04-21 06:47 |
|
Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
9,381 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
10 |
9,388 |
by rfieldhouse Mon, 2014-04-21 06:47 |
|
B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
12 |
9,483 |
by brandon.frenz Sat, 2017-07-08 13:49 |
|
Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
9 |
9,510 |
by Lindsay Mon, 2014-04-21 06:47 |
|
AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
9 |
9,560 |
by jamsmad Mon, 2014-04-21 06:47 |
|
Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
11 |
9,580 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
10 |
9,785 |
by rmoretti Thu, 2017-02-02 08:32 |
|
what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
9,842 |
by Lindsay Mon, 2014-04-21 06:47 |
|
How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
6 |
9,848 |
by rmoretti Mon, 2014-04-21 06:47 |
|
memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
9,919 |
by smlewis Mon, 2014-04-21 06:47 |
|
relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
7 |
9,984 |
by rmoretti Mon, 2014-04-21 06:48 |
|
How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
10 |
10,009 |
by brspurri Mon, 2014-04-21 06:47 |
|
Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
8 |
10,031 |
by rmoretti Mon, 2016-05-09 09:23 |
|
Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
12 |
10,143 |
by smlewis Thu, 2016-12-22 13:11 |
|
RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
5 |
10,162 |
by jtmacd Mon, 2014-04-21 06:47 |
|
fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
11 |
10,366 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
7 |
10,422 |
by rmoretti Mon, 2014-04-21 06:47 |
|
about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
7 |
10,518 |
by smlewis Mon, 2014-04-21 06:47 |
|
MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
10,551 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
3 |
10,564 |
by rmoretti Mon, 2015-02-09 09:09 |
|
Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
11 |
10,585 |
by rmoretti Mon, 2014-04-21 06:47 |
|
nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
10,625 |
by dgront Mon, 2014-04-21 06:47 |
|
how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
8 |
10,634 |
by rmoretti Tue, 2019-07-09 12:50 |
|
Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
13 |
10,785 |
by smlewis Mon, 2014-04-21 06:47 |
|
energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
9 |
10,794 |
by lanselibai Wed, 2014-10-15 01:41 |
Log in to post new content in the forum.