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Rosetta 3 - General

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Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
957 by rmoretti
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,212 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
610 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
1
296 by rmoretti
Fri, 2018-08-03 12:37
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
1,945 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,083 by smlewis
Fri, 2014-11-07 12:03
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
1,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,160 by rmoretti
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
1,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,116 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,124 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
1,351 by smlewis
Mon, 2014-04-21 06:47
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,122 by smlewis
Mon, 2014-04-21 06:48
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
1,354 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
741 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,135 by rmoretti
Mon, 2014-04-21 06:48
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
784 by ssrb
Tue, 2016-07-12 10:02
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,610 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,141 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
1,255 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,177 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
753 by rmoretti
Thu, 2016-09-08 07:56
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
172 by vmulligan
Mon, 2019-04-08 14:49
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,525 by rmoretti
Fri, 2014-05-23 08:09
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,613 by rmoretti
Fri, 2015-07-03 13:24
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
78 by danpf
Tue, 2019-09-03 10:39
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
1,643 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,080 by rmoretti
Fri, 2016-10-14 16:43
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
142 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
1,448 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
1,673 by Anonymous
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,006 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,026 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
1,756 by kaue
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
478 by rmoretti
Mon, 2018-02-05 15:44
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
1,475 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
938 by rmoretti
Thu, 2016-04-28 16:25
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
81 by rmoretti
Mon, 2019-08-26 15:00
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
958 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
3,809 by yuvals
Sat, 2014-06-21 02:17
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
31,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,253 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
1,433 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,245 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
919 by rmoretti
Mon, 2017-11-06 07:36
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
361 by smlewis
Tue, 2018-08-07 16:59
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,187 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
1,086 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
3,069 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
1,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
1,984 by franfdez
Mon, 2014-04-21 06:47
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
1,082 by smlewis
Mon, 2014-04-21 06:47
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
953 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
674 by possu
Tue, 2016-08-30 16:57
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
467 by smlewis
Mon, 2018-03-12 09:57
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
1
157 by vmulligan
Tue, 2019-03-26 11:23
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,001 by frichter
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
1,059 by wlzhang
Sun, 2014-04-20 18:17
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
1,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
546 by rmoretti
Sat, 2017-12-02 10:22
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
1,240 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
997 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
943 by rmoretti
Mon, 2017-08-28 09:32
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
2,705 by smlewis
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,002 by Lati
Fri, 2015-11-20 03:32
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
1,112 by rmoretti
Tue, 2018-04-10 16:00
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
196 by rmoretti
Tue, 2019-07-09 15:57
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,135 by rmoretti
Mon, 2014-06-09 10:05
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,269 by smlewis
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
537 by rmoretti
Tue, 2018-01-30 08:29
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
989 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
2,346 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
520 by rmoretti
Fri, 2017-09-08 15:15
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
54 by rmoretti
Wed, 2019-09-18 10:49
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,102 by smlewis
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,321 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
869 by rmoretti
Mon, 2016-11-14 15:12
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,304 by smlewis
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
1,484 by smlewis
Mon, 2014-04-21 06:47
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
359 by rmoretti
Mon, 2018-02-12 09:39
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
1,965 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,612 by smlewis
Mon, 2014-04-21 06:47
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,377 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,249 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
655 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
1,876 by IAndre
Mon, 2014-04-21 06:47
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
854 by smlewis
Tue, 2015-12-22 08:31
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,012 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,101 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
645 by rmoretti
Thu, 2017-02-02 08:52
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
1
567 by smlewis
Wed, 2018-05-30 11:15
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