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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
1,318 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
1,323 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
932 by rmoretti
Sun, 2016-02-21 06:38
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
775 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
581 by rmoretti
Tue, 2018-01-30 08:29
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,069 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
1,911 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
918 by rmoretti
Mon, 2016-09-05 09:39
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
1,926 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,139 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
567 by rmoretti
Fri, 2017-09-08 15:15
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
130 by rmoretti
Wed, 2019-09-18 10:49
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
990 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
929 by rmoretti
Fri, 2015-07-03 13:51
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
1
591 by smlewis
Fri, 2017-09-08 11:05
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,291 by smlewis
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,233 by rmoretti
Mon, 2014-12-15 02:37
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
931 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
1,411 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,661 by smlewis
Mon, 2014-04-21 06:47
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
393 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,024 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
1,630 by amelie
Tue, 2014-09-30 14:29
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
1,065 by smlewis
Sun, 2017-11-19 20:08
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
1,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,029 by frichter
Mon, 2014-04-21 06:47
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
1
637 by smlewis
Wed, 2018-05-30 11:15
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
865 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
990 by smlewis
Tue, 2017-04-18 08:33
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
1,791 by kaue
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
551 by rmoretti
Sat, 2018-03-17 10:43
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,081 by rmoretti
Mon, 2014-04-21 06:48
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
1,513 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
430 by rmoretti
Mon, 2018-03-19 09:08
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,184 by achambe
Wed, 2016-01-13 10:46
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
31,795 by smlewis
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
1,529 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
1,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic Incorporating Rosetta Binary and Database to a Web Server Pipeline
by smkim » Fri, 2018-09-28 20:35
1
551 by rmoretti
Fri, 2018-11-09 12:22
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
1,260 by rmoretti
Tue, 2015-07-14 15:27
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
1,473 by smlewis
Mon, 2014-04-21 06:47
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
1,115 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
367 by smlewis
Thu, 2018-06-28 13:34
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,029 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
612 by smlewis
Wed, 2017-06-28 06:59
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,148 by albumns
Mon, 2014-04-21 06:47
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
1,020 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
592 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
199 by rmoretti
Tue, 2019-07-09 15:48
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
1,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,331 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,406 by rmoretti
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,104 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,019 by nawsad
Wed, 2014-06-25 13:26
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
960 by rmoretti
Wed, 2015-09-02 12:48
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
708 by smlewis
Wed, 2016-08-24 07:23
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
114 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
1,242 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
747 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
520 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
756 by rmoretti
Thu, 2016-04-28 15:57
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,300 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
506 by rmoretti
Wed, 2018-01-31 14:57
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
838 by rmoretti
Tue, 2016-09-13 07:41
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
973 by rmoretti
Fri, 2015-07-03 13:14
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
425 by rmoretti
Thu, 2018-06-28 14:22
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
138 by rmoretti
Mon, 2019-08-26 15:01
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
700 by rmoretti
Wed, 2017-03-29 12:37
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,219 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,133 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
843 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,233 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,103 by yuvals
Mon, 2014-10-06 15:02
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
1,520 by smlewis
Mon, 2014-04-21 06:47
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,149 by smlewis
Mon, 2014-04-21 06:47
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
451 by matteoferla
Thu, 2018-09-13 06:21
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
1,796 by smlewis
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
1,347 by Anonymous
Mon, 2014-04-21 06:47
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
986 by smlewis
Mon, 2014-04-21 06:47
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
975 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
220 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
1,429 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
507 by jkleman
Sat, 2018-04-14 10:55
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
237 by connyyu
Thu, 2019-04-18 03:26
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
1,977 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,230 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,399 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
2,652 by smlewis
Mon, 2014-04-21 06:47
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
326 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
910 by nawsad
Fri, 2014-06-20 03:00
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
869 by rmoretti
Thu, 2015-08-06 09:28
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
821 by smlewis
Thu, 2016-08-11 13:16
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,651 by smlewis
Mon, 2014-04-21 06:47
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