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Rosetta 3 - General

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Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
1,116 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
920 by smlewis
Mon, 2018-04-16 16:32
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
483 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,375 by smlewis
Mon, 2014-04-21 06:47
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
2,085 by smlewis
Fri, 2016-07-22 07:31
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
686 by rmoretti
Fri, 2018-08-03 08:59
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,366 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
1,425 by smlewis
Fri, 2014-02-28 05:45
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,017 by rmoretti
Mon, 2017-05-15 09:03
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
402 by smlewis
Wed, 2019-05-29 13:21
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
131 by matteoferla
Fri, 2020-07-24 03:06
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,572 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
2,842 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
570 by rmoretti
Wed, 2018-11-21 14:01
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
1,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
1,745 by mpacella
Mon, 2014-04-21 06:47
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,498 by rmoretti
Thu, 2015-04-02 12:52
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
864 by rmoretti
Tue, 2016-07-12 08:48
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
1,957 by smlewis
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
1,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
604 by rmoretti
Thu, 2018-02-22 09:29
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
213 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
1,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
1,526 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,101 by rmoretti
Sun, 2016-02-21 06:38
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,024 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
520 by vmulligan
Tue, 2019-03-26 11:30
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
1,534 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,381 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
1,543 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
2,156 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
1,121 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
1,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
2,371 by rmoretti
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
1,631 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
1,536 by IAndre
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,387 by rmoretti
Mon, 2014-12-15 02:37
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,107 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,191 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
1,837 by amelie
Tue, 2014-09-30 14:29
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,389 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
667 by Loki01
Wed, 2017-12-13 05:27
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,279 by jtmacd
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,255 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,085 by rmoretti
Fri, 2015-07-03 13:51
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
1
805 by smlewis
Fri, 2017-09-08 11:05
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
2,267 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,379 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,162 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,048 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
1,326 by smlewis
Tue, 2017-04-18 08:33
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,342 by fred
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,234 by rmoretti
Mon, 2014-04-21 06:48
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,886 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
559 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
262 by rmoretti
Wed, 2020-04-01 10:10
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
376 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
1,503 by rmoretti
Tue, 2015-07-14 15:27
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,192 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
354 by rmoretti
Mon, 2019-11-04 12:54
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,218 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
840 by smlewis
Wed, 2017-06-28 06:59
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
402 by smlewis
Fri, 2019-06-28 13:56
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,274 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,405 by achambe
Wed, 2016-01-13 10:46
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
479 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
2,514 by rmoretti
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,279 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,167 by nawsad
Wed, 2014-06-25 13:26
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,275 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,149 by rmoretti
Wed, 2015-09-02 12:48
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
864 by smlewis
Wed, 2016-08-24 07:23
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
1,530 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
1,610 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
917 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
667 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
394 by rmoretti
Mon, 2019-08-26 14:52
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
1,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,624 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
2,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
909 by rmoretti
Thu, 2016-04-28 15:57
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,261 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
449 by rmoretti
Wed, 2019-04-03 10:03
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
1,479 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
2,382 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
1,841 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,033 by rmoretti
Tue, 2016-09-13 07:41
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
294 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
1,512 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,284 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,486 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
674 by smlewis
Tue, 2018-06-19 10:31
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,146 by rmoretti
Fri, 2015-07-03 13:14
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
1,626 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
912 by rmoretti
Wed, 2017-03-29 12:37
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
458 by ziheng@mit.edu
Thu, 2019-04-25 14:31
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