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Rosetta 3 - General
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Views | Last post | |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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6,005 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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7,877 |
by rmoretti Fri, 2015-07-03 14:02 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,712 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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6,011 |
by rmoretti Tue, 2021-02-09 11:52 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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7,879 |
by mahajanr Mon, 2014-04-21 06:47 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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5,086 |
by smlewis Tue, 2016-08-30 13:47 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
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4,987 |
by smlewis Mon, 2014-04-21 06:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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5,261 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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4,839 |
by rmoretti Thu, 2017-08-03 09:01 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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2,184 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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5,726 |
by rmoretti Sat, 2015-04-25 10:05 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,588 |
by smlewis Tue, 2018-07-03 11:22 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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4,756 |
by smlewis Wed, 2018-03-21 08:42 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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5,009 |
by pachecoj Sat, 2014-08-09 06:33 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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10,172 |
by jtmacd Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,641 |
by code_Monkey Thu, 2021-03-18 08:03 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
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5,005 |
by w107kdk Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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5,251 |
by banshee Tue, 2016-04-26 00:47 |
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Problem with relaxing a PDB around a chemically bound ligand by drinker615 » Sat, 2024-04-06 16:04 |
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203 |
by drinker615 Tue, 2024-04-16 19:06 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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10,626 |
by dgront Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,925 |
by rmoretti Mon, 2014-04-21 06:48 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
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5,343 |
by attesor Mon, 2014-04-21 06:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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15,702 |
by nawsad Mon, 2014-04-21 06:47 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,954 |
by einew Mon, 2014-04-21 06:47 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,109 |
by rmoretti Thu, 2018-03-08 07:46 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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5,538 |
by rmoretti Tue, 2015-05-05 14:31 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,974 |
by smlewis Tue, 2018-06-12 10:54 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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4,841 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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6,445 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,991 |
by doranhen Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,655 |
by matteoferla Wed, 2019-11-20 02:32 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,872 |
by xpzhang Mon, 2014-04-21 06:47 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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5,829 |
by linucks Wed, 2018-04-25 08:50 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
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4,751 |
by matteoferla Wed, 2021-09-29 01:58 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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6,432 |
by rmoretti Thu, 2015-04-16 10:09 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
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5,409 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,944 |
by smlewis Wed, 2018-04-11 11:45 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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7,023 |
by smlewis Mon, 2014-04-21 06:48 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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5,137 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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5,477 |
by cannond Wed, 2017-03-08 03:00 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
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5,629 |
by aroop Mon, 2014-04-21 06:47 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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6,103 |
by obdulia Wed, 2016-07-13 09:11 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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4,805 |
by jadolfbr Tue, 2019-04-16 09:15 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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7,869 |
by rlwoltz Mon, 2014-04-21 06:47 |
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setting timeout option in MPI run by syntekabio2019 » Mon, 2024-02-26 01:09 |
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381 |
by rmoretti Wed, 2024-02-28 09:20 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
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5,418 |
by zeynep Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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6,637 |
by einew Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
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6,457 |
by smlewis Mon, 2014-04-21 06:47 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
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6,459 |
by rmoretti Mon, 2014-04-21 06:47 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
4,939 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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8,105 |
by albumns Mon, 2014-04-21 06:47 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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6,714 |
by ssrb Tue, 2015-09-22 08:35 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
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7,994 |
by rmoretti Thu, 2016-04-28 15:53 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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8,590 |
by rmoretti Mon, 2017-08-14 09:06 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
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7,381 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
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4,386 |
by freedman Mon, 2017-03-06 13:24 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,943 |
by MRH Mon, 2014-04-21 06:48 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
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5,020 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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7,171 |
by ritacc18 Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,736 |
by pachecoj Wed, 2017-03-29 12:32 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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6,594 |
by qlj Mon, 2014-04-21 06:47 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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5,072 |
by salvatta Mon, 2018-09-10 10:04 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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6,701 |
by smlewis Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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6,072 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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4,140 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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5,540 |
by rmoretti Sat, 2014-05-17 14:10 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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5,176 |
by rpache Mon, 2014-04-21 06:47 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
5 |
2,832 |
by everyday847 Mon, 2021-03-29 20:19 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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3,093 |
by rmoretti Fri, 2020-11-06 08:04 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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5,581 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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5,605 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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2,098 |
by matteoferla Fri, 2022-07-01 13:49 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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5,612 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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4,462 |
by Loki01 Thu, 2017-12-14 06:20 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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5,348 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
5,913 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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4,377 |
by smlewis Wed, 2017-08-16 08:30 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
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4,243 |
by smlewis Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
5,805 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
5,417 |
by rosa Mon, 2014-04-21 06:48 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
3,820 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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5,328 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
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5,929 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,815 |
by linucks Mon, 2017-07-03 09:50 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
7,389 |
by Filipe Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
6,243 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
4,495 |
by IAndre Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
6,381 |
by lanselibai Fri, 2014-12-12 10:27 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
4 |
5,547 |
by albumns Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,385 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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4,742 |
by Martin Floor Mon, 2014-04-21 06:47 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
4,060 |
by zhiguang Tue, 2016-11-15 12:27 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,453 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
4 |
1,076 |
by Wexter300 Wed, 2023-01-25 12:34 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
6,070 |
by cossio Thu, 2015-01-29 11:50 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
4 |
4,292 |
by zlni Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
6,419 |
by Lindsay Mon, 2014-04-21 06:47 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
3,416 |
by smlewis Mon, 2018-12-31 08:58 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
5,026 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
4 |
5,056 |
by jtmacd Mon, 2014-04-21 06:47 |
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