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Rosetta 3 - General

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Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
1,194 by aaj
Mon, 2016-02-29 04:45
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
5
2,552 by Payal Chatterjee
Wed, 2016-02-24 10:35
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
1,094 by aaj
Mon, 2016-02-22 07:50
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
1,195 by aaj
Mon, 2016-02-22 07:43
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
824 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
945 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,586 by jrcf
Fri, 2016-02-12 16:41
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
715 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
2,612 by rmoretti
Thu, 2016-02-04 09:29
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,463 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,025 by smlewis
Sun, 2016-01-24 03:24
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,215 by smlewis
Thu, 2016-01-14 08:19
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,062 by achambe
Wed, 2016-01-13 10:46
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,033 by Lati
Tue, 2016-01-12 13:28
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
750 by smlewis
Sun, 2016-01-10 10:02
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
792 by smlewis
Tue, 2015-12-22 08:31
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
1,166 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,075 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
2,626 by rosend
Fri, 2015-12-18 19:39
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
9,173 by rmoretti
Fri, 2015-12-18 14:26
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
1,569 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
948 by aloshbau
Mon, 2015-12-14 23:30
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,378 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,024 by Al52
Tue, 2015-12-01 18:22
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,034 by road runner
Tue, 2015-12-01 10:08
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
4
1,795 by tylerborrman
Tue, 2015-11-24 13:52
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
939 by Lati
Fri, 2015-11-20 03:32
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
2,517 by rmoretti
Tue, 2015-11-10 11:52
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,061 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
3,488 by rmoretti
Tue, 2015-10-27 09:11
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
767 by rmoretti
Tue, 2015-10-27 08:46
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
1,492 by attesor
Thu, 2015-10-22 03:42
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
1,679 by jrcf
Fri, 2015-10-16 10:57
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,038 by gerdos
Fri, 2015-10-16 03:01
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
3,214 by ssrb
Tue, 2015-09-22 08:35
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
1,098 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
3,710 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
1,914 by cheyuk
Sun, 2015-09-20 02:08
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
762 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
1,569 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
1,823 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,156 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
859 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
1,275 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
1,875 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
2,523 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
1,309 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
775 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
1,221 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
1,124 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
3,522 by kbuhr
Tue, 2015-07-14 04:30
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
1,559 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
1,113 by MarkW
Fri, 2015-07-03 15:36
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
4,000 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
838 by rmoretti
Fri, 2015-07-03 13:51
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
30,190 by rmoretti
Fri, 2015-07-03 13:29
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,521 by rmoretti
Fri, 2015-07-03 13:24
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
869 by rmoretti
Fri, 2015-07-03 13:14
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,033 by rmoretti
Fri, 2015-07-03 13:04
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
1,112 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,399 by jwillis
Sat, 2015-06-27 21:11
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
948 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
4,132 by rmoretti
Mon, 2015-06-01 15:27
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
1,320 by pitmand
Tue, 2015-05-26 12:20
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
898 by rmoretti
Mon, 2015-05-25 11:07
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,313 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
2,282 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
5,735 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
1,722 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
857 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
2,551 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
5,937 by rmoretti
Fri, 2015-04-24 12:15
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
1,194 by straore
Fri, 2015-04-17 01:54
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
2,783 by rmoretti
Thu, 2015-04-16 10:09
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,200 by rmoretti
Thu, 2015-04-02 12:52
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
1,986 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
803 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
2,342 by rmoretti
Mon, 2015-03-30 14:43
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,110 by jadolfbr
Fri, 2015-02-27 11:08
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
12,305 by rmoretti
Wed, 2015-02-18 09:23
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
946 by rmoretti
Wed, 2015-02-18 09:19
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
948 by rmoretti
Wed, 2015-02-18 09:17
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
1,339 by lah435
Thu, 2015-02-12 09:16
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
7,214 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
3,266 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
6,082 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
1,839 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
5,133 by rmoretti
Mon, 2015-02-09 09:09
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
1,907 by jwillis
Sat, 2015-02-07 20:40
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
2,791 by cossio
Thu, 2015-01-29 11:50
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
2,536 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
2,222 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
4,079 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,202 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
2,089 by zaldini
Wed, 2015-01-07 20:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
2,181 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
1,998 by zaldini
Fri, 2015-01-02 05:38
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,578 by smlewis
Tue, 2014-12-23 13:58
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
3,193 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
1,980 by lanselibai
Tue, 2014-12-16 10:48
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