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Rosetta 3 - General

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Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,251 by rmoretti
Fri, 2016-10-14 16:43
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
1,166 by rmoretti
Fri, 2016-10-14 15:46
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
1,239 by msardejani
Wed, 2016-10-05 10:53
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
1,563 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
960 by rmoretti
Tue, 2016-09-13 07:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
2,468 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
865 by rmoretti
Thu, 2016-09-08 07:56
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
1,019 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
13,313 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
804 by possu
Tue, 2016-08-30 16:57
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
2,390 by smlewis
Tue, 2016-08-30 13:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
881 by Karol
Mon, 2016-08-29 05:27
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
1,454 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
797 by smlewis
Wed, 2016-08-24 07:23
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
819 by smlewis
Mon, 2016-08-22 10:39
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
1,675 by smlewis
Mon, 2016-08-22 10:28
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
3,177 by krdav
Wed, 2016-08-17 12:57
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
923 by smlewis
Thu, 2016-08-11 13:16
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
831 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
2,022 by msardejani
Sun, 2016-08-07 17:49
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
1,161 by sdh_h
Thu, 2016-08-04 11:22
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
1,635 by smlewis
Fri, 2016-07-29 07:43
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
1,958 by smlewis
Fri, 2016-07-22 07:31
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
2,343 by smlewis
Wed, 2016-07-13 23:41
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
2,878 by obdulia
Wed, 2016-07-13 09:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
909 by ssrb
Tue, 2016-07-12 10:02
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
799 by rmoretti
Tue, 2016-07-12 08:48
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,100 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
907 by rmoretti
Tue, 2016-07-12 08:43
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
837 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
983 by rmoretti
Tue, 2016-07-12 08:36
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
2,210 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
1,503 by felipet
Sat, 2016-07-09 09:50
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
581 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
1,372 by smlewis
Thu, 2016-06-30 08:44
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
825 by rmoretti
Wed, 2016-06-29 10:20
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
9,397 by smlewis
Tue, 2016-06-28 09:05
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
1,267 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
869 by rmoretti
Wed, 2016-06-15 16:06
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
1,782 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
1,117 by DmitriiN
Wed, 2016-06-01 15:46
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
7,392 by smlewis
Tue, 2016-05-17 08:06
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,182 by Karol
Thu, 2016-05-12 07:58
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
634 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
5,353 by rmoretti
Mon, 2016-05-09 09:23
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,183 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
1,460 by jrcf
Tue, 2016-05-03 17:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
2,443 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,116 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
3,419 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
842 by rmoretti
Thu, 2016-04-28 15:57
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
4,759 by rmoretti
Thu, 2016-04-28 15:53
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,026 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
2,585 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
775 by rmoretti
Thu, 2016-04-28 14:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
2,466 by banshee
Tue, 2016-04-26 00:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
2,283 by saxen
Mon, 2016-04-25 10:38
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
9,457 by aaj
Fri, 2016-04-22 15:20
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
1,927 by smlewis
Thu, 2016-04-21 16:00
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
975 by rmoretti
Fri, 2016-04-08 08:43
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
1,371 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,148 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
1,860 by smlewis
Wed, 2016-03-30 09:52
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
2,428 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
3,976 by jrcf
Wed, 2016-03-23 12:16
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
1,329 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
905 by smlewis
Sun, 2016-03-13 15:25
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
1,556 by rmoretti
Mon, 2016-03-07 14:20
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
1,472 by aaj
Mon, 2016-02-29 04:45
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
5
3,140 by Payal Chatterjee
Wed, 2016-02-24 10:35
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
1,352 by aaj
Mon, 2016-02-22 07:50
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
1,462 by aaj
Mon, 2016-02-22 07:43
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,025 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,177 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,928 by jrcf
Fri, 2016-02-12 16:41
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
904 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
3,320 by rmoretti
Thu, 2016-02-04 09:29
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,908 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,283 by smlewis
Sun, 2016-01-24 03:24
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,551 by smlewis
Thu, 2016-01-14 08:19
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,317 by achambe
Wed, 2016-01-13 10:46
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,356 by Lati
Tue, 2016-01-12 13:28
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
940 by smlewis
Sun, 2016-01-10 10:02
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
981 by smlewis
Tue, 2015-12-22 08:31
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
1,469 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,318 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
3,309 by rosend
Fri, 2015-12-18 19:39
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
10,795 by rmoretti
Fri, 2015-12-18 14:26
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
1,928 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,177 by aloshbau
Mon, 2015-12-14 23:30
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,755 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,250 by Al52
Tue, 2015-12-01 18:22
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,287 by road runner
Tue, 2015-12-01 10:08
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
4
2,257 by tylerborrman
Tue, 2015-11-24 13:52
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,150 by Lati
Fri, 2015-11-20 03:32
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
3,091 by rmoretti
Tue, 2015-11-10 11:52
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,694 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
4,220 by rmoretti
Tue, 2015-10-27 09:11
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
981 by rmoretti
Tue, 2015-10-27 08:46
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
1,892 by attesor
Thu, 2015-10-22 03:42
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