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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
782 by smlewis
Thu, 2016-08-11 13:16
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,215 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,163 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
842 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
599 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,084 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,135 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
1,516 by mpacella
Mon, 2014-04-21 06:47
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
762 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
298 by rmoretti
Wed, 2018-11-21 14:14
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,410 by smlewis
Mon, 2014-04-21 06:47
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,031 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
814 by rmoretti
Sat, 2015-09-19 13:20
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
1
49 by vmulligan
Tue, 2019-09-17 13:08
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
966 by smlewis
Mon, 2014-04-21 06:47
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,161 by smlewis
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
1,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,682 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
1,373 by smlewis
Mon, 2014-04-21 06:47
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
1,300 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,188 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
1,299 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,525 by rmoretti
Fri, 2014-05-23 08:09
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
1,204 by rmoretti
Fri, 2015-07-03 12:58
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
75 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,079 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
769 by smlewis
Sun, 2016-03-13 15:25
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
555 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
1,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
464 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
385 by jkleman
Tue, 2018-07-31 13:19
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
408 by ac.research
Sat, 2017-11-18 06:54
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,273 by smlewis
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,006 by yarovoy
Wed, 2016-03-30 12:37
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
985 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,505 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
183 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
1,962 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,210 by smlewis
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,100 by rmoretti
Fri, 2015-07-03 13:04
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,145 by fred
Mon, 2014-04-21 06:47
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,064 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,026 by smlewis
Mon, 2014-04-21 06:47
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
1,331 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
1,279 by smlewis
Mon, 2014-04-21 06:47
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
548 by smlewis
Mon, 2018-04-16 16:32
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
212 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,083 by smlewis
Fri, 2014-11-07 12:03
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
1
325 by dfcoelho
Tue, 2018-10-16 08:35
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,090 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
3,069 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
1,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
741 by rmoretti
Tue, 2016-07-12 08:43
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
2,208 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
1,059 by wlzhang
Sun, 2014-04-20 18:17
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
784 by ssrb
Tue, 2016-07-12 10:02
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
1,485 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,020 by smlewis
Mon, 2014-04-21 06:47
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
134 by smlewis
Wed, 2019-05-29 13:21
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,610 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
255 by rmoretti
Wed, 2018-11-21 14:01
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,177 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
753 by rmoretti
Thu, 2016-09-08 07:56
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
403 by rmoretti
Fri, 2018-08-03 08:59
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
2,817 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
2,106 by rmoretti
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,135 by rmoretti
Mon, 2014-06-09 10:05
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,613 by rmoretti
Fri, 2015-07-03 13:24
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
1
104 by vmulligan
Fri, 2019-07-26 15:00
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,228 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
408 by rmoretti
Thu, 2018-02-22 09:29
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,004 by sid
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
1,640 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
1,643 by rmoretti
Wed, 2014-09-17 10:06
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
2,705 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,080 by rmoretti
Fri, 2016-10-14 16:43
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
1,416 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
1,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
1,143 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,212 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
243 by vmulligan
Tue, 2019-03-26 11:30
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,265 by smlewis
Mon, 2014-04-21 06:47
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,116 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
938 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
475 by Loki01
Wed, 2017-12-13 05:27
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
3,809 by yuvals
Sat, 2014-06-21 02:17
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
1,876 by IAndre
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
975 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,187 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
1,204 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
1,240 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
1,278 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
957 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
292 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,097 by smlewis
Mon, 2014-04-21 06:47
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