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Rosetta 3 - General

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Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,747 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
586 by rmoretti
Thu, 2023-03-16 11:46
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
2,175 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
2,132 by rmoretti
Wed, 2015-06-17 12:43
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,585 by danpf
Tue, 2019-09-03 10:39
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
918 by ajasja
Thu, 2021-11-18 00:33
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
2,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,623 by rmoretti
Mon, 2014-06-16 08:23
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
2,171 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
2,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
2,286 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,486 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,581 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
2,221 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,422 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
717 by rmoretti
Tue, 2022-09-06 08:22
Normal topic Global Docking with output analysis RMS
by kwu030 » Fri, 2024-02-23 09:17
1
162 by rmoretti
Mon, 2024-02-26 08:24
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
3,330 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,075 by rmoretti
Mon, 2016-11-14 15:12
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
1,331 by matteoferla
Tue, 2020-04-14 03:36
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,891 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
2,128 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,881 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
1,161 by rmoretti
Wed, 2021-07-14 07:07
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
669 by rmoretti
Wed, 2022-09-14 09:14
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,982 by smlewis
Tue, 2015-12-22 08:31
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
2,310 by rmoretti
Wed, 2018-01-31 14:57
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
2,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
2,126 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,421 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,839 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,482 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,809 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,188 by nawsad
Fri, 2014-06-20 02:48
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,846 by smlewis
Mon, 2016-08-22 10:39
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
2,456 by denatured
Fri, 2019-12-13 11:19
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
1,208 by rmoretti
Wed, 2021-01-20 07:39
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
872 by vmulligan
Thu, 2022-03-03 18:48
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,356 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
3,377 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
3,215 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,072 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,332 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,595 by rmoretti
Thu, 2018-06-28 14:22
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,547 by rmoretti
Mon, 2019-08-26 15:00
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,530 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
1,352 by matteoferla
Thu, 2021-09-02 03:50
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,739 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
2,255 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
2,293 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,856 by rmoretti
Mon, 2017-03-06 08:37
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,448 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,412 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
3,078 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,569 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,801 by matteoferla
Thu, 2018-09-13 06:21
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
1
2,115 by paulbo
Sun, 2024-02-04 22:03
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
2,029 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
2,032 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,906 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,832 by kaue
Mon, 2014-04-21 06:47
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
2,513 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,714 by rmoretti
Wed, 2017-09-06 08:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,469 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,362 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
4,055 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,779 by smlewis
Wed, 2017-03-22 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,689 by jkleman
Sat, 2018-04-14 10:55
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,717 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
693 by almeida85
Fri, 2022-08-12 05:56
Normal topic Error about rifdocking
by ng98 » Mon, 2024-01-08 16:21
1
205 by rmoretti
Tue, 2024-01-09 23:41
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
2,133 by sid
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,903 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
2,132 by rmoretti
Fri, 2014-09-12 09:11
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,963 by rmoretti
Tue, 2015-11-10 11:52
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
2,290 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,525 by smlewis
Wed, 2020-03-04 07:40
Normal topic how same random seeds can be used in rosetta for mpi run.
by exchhattu » Wed, 2009-10-28 22:09
1
2,785 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
1
808 by JasonIsaac
Mon, 2022-12-05 18:41
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,506 by rmoretti
Wed, 2019-09-18 10:49
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,362 by rmoretti
Tue, 2021-02-09 12:25
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
1,062 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
612 by JW_24
Tue, 2023-01-24 04:55
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,260 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
32,956 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,481 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
2,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
2,137 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
2,083 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
687 by rmoretti
Wed, 2022-09-07 09:19
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
2,128 by smlewis
Mon, 2014-04-21 06:47
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
3,172 by rmoretti
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
2,180 by frichter
Mon, 2014-04-21 06:47
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,328 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
2,216 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,678 by vmulligan
Sat, 2020-04-11 17:40
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