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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
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5,378 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
4 |
4,737 |
by Martin Floor Mon, 2014-04-21 06:47 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
4,046 |
by zhiguang Tue, 2016-11-15 12:27 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
6,415 |
by Lindsay Mon, 2014-04-21 06:47 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,439 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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1,058 |
by Wexter300 Wed, 2023-01-25 12:34 |
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solvation by gw » Wed, 2011-08-31 17:14 |
4 |
4,633 |
by smlewis Mon, 2014-04-21 06:47 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
6,055 |
by cossio Thu, 2015-01-29 11:50 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
3,404 |
by smlewis Mon, 2018-12-31 08:58 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
7,502 |
by dgront Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
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5,015 |
by rmoretti Mon, 2014-04-21 06:47 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
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4,373 |
by mdyini Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
4 |
4,484 |
by albumns Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,665 |
by cheyuk Sun, 2015-09-20 02:08 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
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4,344 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
4 |
6,143 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
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5,637 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
4,512 |
by rmoretti Mon, 2014-04-21 06:47 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
4 |
4,242 |
by msardejani Sun, 2016-08-07 17:49 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
4 |
3,316 |
by nannemdp Fri, 2021-02-05 06:49 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
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4,251 |
by smlewis Mon, 2014-04-21 06:47 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
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3,989 |
by smlewis Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
4,735 |
by gw Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
2,931 |
by decrSTL Tue, 2019-08-27 10:24 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
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4,528 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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3,573 |
by rmoretti Wed, 2018-11-21 14:11 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
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4,120 |
by jtmacd Mon, 2014-04-21 06:47 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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4,585 |
by zaldini Fri, 2015-01-02 05:38 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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4,700 |
by lzx32 Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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5,436 |
by nilkoeg Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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4,731 |
by pardave Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,849 |
by rmoretti Mon, 2018-01-15 15:24 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
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2,909 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
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7,854 |
by rmoretti Tue, 2019-07-09 10:29 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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4,363 |
by linucks Fri, 2018-02-23 08:08 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
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5,932 |
by lqzhang Mon, 2014-04-21 06:47 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,921 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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3,066 |
by maruhuang Thu, 2019-09-26 18:55 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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6,118 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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4,557 |
by ac.research Mon, 2017-09-04 16:43 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
4,813 |
by lanselibai Tue, 2014-12-16 10:48 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
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4,218 |
by pardave Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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4,617 |
by zaldini Wed, 2015-01-07 20:35 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
11,374 |
by smlewis Mon, 2014-04-21 06:47 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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4,499 |
by jwillis Sat, 2015-02-07 20:40 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
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4,835 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
4,190 |
by cannond Wed, 2017-03-01 08:05 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,683 |
by smlewis Mon, 2014-04-21 06:47 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
2,999 |
by matteoferla Mon, 2019-12-23 07:24 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
4 |
1,086 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
4 |
4,920 |
by rmoretti Mon, 2015-03-30 14:43 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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1,445 |
by almeida85 Thu, 2022-08-11 00:29 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,883 |
by zharmad Mon, 2014-04-21 06:47 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
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3,235 |
by eminegenetics Fri, 2018-09-21 07:42 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,696 |
by smlewis Wed, 2016-07-13 23:41 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
4,668 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
4,432 |
by justin Mon, 2014-04-21 06:47 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
5,668 |
by phanvy Wed, 2014-10-08 01:42 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
4 |
4,263 |
by japgar Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,680 |
by einew Mon, 2014-04-21 06:47 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,662 |
by saxen Mon, 2016-04-25 10:38 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
4 |
3,496 |
by rmoretti Fri, 2018-08-03 11:39 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
4 |
1,174 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,678 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
3,297 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
1,609 |
by protein_fan Fri, 2022-04-15 17:41 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
4,308 |
by bo Mon, 2014-04-21 06:47 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
4 |
2,621 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
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4,846 |
by rmoretti Mon, 2014-04-21 06:47 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,986 |
by matteoferla Sat, 2020-03-21 09:14 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
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4,372 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
3,992 |
by smlewis Wed, 2016-03-30 09:52 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
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4,678 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
4 |
4,281 |
by zlni Mon, 2014-04-21 06:47 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
4 |
6,438 |
by kwak Mon, 2014-04-21 06:47 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
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2,607 |
by everyday847 Thu, 2021-04-01 11:59 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
2,994 |
by Kazu Mon, 2020-05-18 10:52 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
4,473 |
by jiongzhang Mon, 2014-04-21 06:47 |
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Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
3 |
4,289 |
by smlewis Mon, 2014-04-21 06:47 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
3 |
3,765 |
by rmoretti Thu, 2014-04-10 07:38 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
3 |
2,835 |
by rmoretti Thu, 2017-08-03 08:50 |
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
3 |
3,841 |
by smlewis Mon, 2014-04-21 06:47 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
3 |
4,793 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
4,165 |
by rmoretti Mon, 2014-04-21 06:48 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
3,423 |
by matteoferla Mon, 2018-02-26 02:05 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
3 |
4,646 |
by smlewis Wed, 2017-11-08 12:08 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
3 |
5,074 |
by jurkm Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
4,303 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
2,545 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr by alove1 » Sat, 2023-10-28 17:19 |
3 |
567 |
by alove1 Mon, 2023-10-30 13:18 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
3 |
3,642 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
3 |
4,140 |
by monica0569 Mon, 2014-04-21 06:47 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
3 |
3,614 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
3 |
5,620 |
by smlewis Mon, 2014-04-21 06:47 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
3 |
3,872 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
5,879 |
by Lindsay Mon, 2014-04-21 06:48 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
3 |
2,135 |
by zhoubin Mon, 2021-03-01 22:11 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
3 |
3,576 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,812 |
by smlewis Mon, 2014-04-21 06:47 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
3 |
3,900 |
by rmoretti Wed, 2015-12-16 11:22 |
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