You are here

Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
3,358 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
6,233 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
1,893 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
5,309 by rmoretti
Mon, 2015-02-09 09:09
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
1,968 by jwillis
Sat, 2015-02-07 20:40
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
2,882 by cossio
Thu, 2015-01-29 11:50
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
2,639 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
2,269 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
4,217 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,238 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
2,165 by zaldini
Wed, 2015-01-07 20:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
2,239 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
2,054 by zaldini
Fri, 2015-01-02 05:38
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,615 by smlewis
Tue, 2014-12-23 13:58
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
3,284 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
2,057 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
2,789 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
718 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,173 by rmoretti
Mon, 2014-12-15 02:37
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
3,067 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
1,376 by phanvy
Wed, 2014-12-10 00:17
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
2,213 by cossio
Thu, 2014-12-04 05:41
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,549 by rmoretti
Wed, 2014-12-03 18:52
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,289 by cossio
Wed, 2014-12-03 14:51
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
5,252 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
2,424 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
752 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,283 by pachecoj
Tue, 2014-11-11 19:30
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
8,410 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
984 by rmoretti
Tue, 2014-11-11 13:22
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,060 by smlewis
Fri, 2014-11-07 12:03
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,008 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
4,137 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
3,945 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
1,047 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
4,385 by attesor
Fri, 2014-10-31 04:49
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
1,481 by attesor
Fri, 2014-10-31 04:23
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
2,005 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
2,437 by phanvy
Thu, 2014-10-16 18:54
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,143 by rmoretti
Thu, 2014-10-16 10:33
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
1,337 by phanvy
Wed, 2014-10-15 21:41
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
1,142 by pachecoj
Wed, 2014-10-15 15:12
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
4,732 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
1,365 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
2,661 by phanvy
Wed, 2014-10-08 01:42
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
6,334 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,034 by yuvals
Mon, 2014-10-06 15:02
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
1,548 by amelie
Tue, 2014-09-30 14:29
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
1,437 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
3,936 by rmoretti
Wed, 2014-09-24 09:57
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
10
4,951 by nawsad
Tue, 2014-09-23 21:38
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
3,935 by lanselibai
Mon, 2014-09-22 08:13
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
1,599 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
985 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
2,216 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
1,992 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
3,926 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
1,346 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,150 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
1,547 by phanvy
Wed, 2014-07-02 23:32
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
3,702 by rmoretti
Tue, 2014-07-01 12:45
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,168 by rmoretti
Tue, 2014-07-01 12:21
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
929 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
974 by nawsad
Wed, 2014-06-25 13:26
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
1,394 by phanvy
Sun, 2014-06-22 23:29
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
3,740 by yuvals
Sat, 2014-06-21 02:17
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
845 by nawsad
Fri, 2014-06-20 03:00
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,003 by nawsad
Fri, 2014-06-20 02:48
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
7,388 by phanvy
Wed, 2014-06-18 07:50
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
1,307 by rmoretti
Mon, 2014-06-16 08:23
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,130 by rmoretti
Tue, 2014-06-10 11:34
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,103 by rmoretti
Mon, 2014-06-09 10:05
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
1,722 by rmoretti
Tue, 2014-06-03 11:45
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
1,851 by szypanther
Mon, 2014-05-26 22:03
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
2,481 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
2,616 by rmoretti
Sat, 2014-05-17 14:10
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
9,749 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,073 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
2,291 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
2,849 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
1,372 by Run
Mon, 2014-04-21 06:48
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
865 by vasek
Mon, 2014-04-21 06:48
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
1,253 by rmoretti
Mon, 2014-04-21 06:48
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,367 by Lindsay
Mon, 2014-04-21 06:48
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
2,302 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
1,917 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,104 by rmoretti
Mon, 2014-04-21 06:48
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
3,930 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
1,421 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
1,609 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
1,571 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
1,930 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,160 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
2,313 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
2,626 by rmoretti
Mon, 2014-04-21 06:48
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
2,786 by rmoretti
Mon, 2014-04-21 06:48
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,018 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
5,513 by rmoretti
Mon, 2014-04-21 06:48
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
8,729 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
2,813 by rmoretti
Mon, 2014-04-21 06:48
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General