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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
1,626 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,352 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
706 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,703 by smlewis
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
4,444 by yuvals
Sat, 2014-06-21 02:17
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,522 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
1,251 by smlewis
Mon, 2014-04-21 06:47
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
3,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
2,227 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
1,811 by jtmacd
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
959 by rmoretti
Sat, 2018-03-17 10:43
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,236 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
959 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
1,607 by smlewis
Sun, 2017-11-19 20:08
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
456 by jkleman
Thu, 2020-01-16 11:05
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,282 by sid
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,315 by Lati
Fri, 2015-11-20 03:32
Normal topic Incorporating Rosetta Binary and Database to a Web Server Pipeline
by smkim » Fri, 2018-09-28 20:35
1
899 by rmoretti
Fri, 2018-11-09 12:22
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
464 by renedominik
Wed, 2020-02-12 06:16
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,421 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,283 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
1,464 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
664 by smlewis
Thu, 2018-06-28 13:34
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
1,793 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
1,968 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
729 by rmoretti
Mon, 2018-03-19 09:08
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
383 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
563 by rmoretti
Tue, 2019-07-09 15:48
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,511 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,205 by rmoretti
Mon, 2016-11-14 15:12
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
1,637 by smlewis
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,224 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
1,749 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
563 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
1,646 by rmoretti
Mon, 2014-06-16 08:23
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,353 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,349 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,558 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,668 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
1,577 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
1,045 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
938 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,141 by smlewis
Tue, 2015-12-22 08:31
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,083 by rmoretti
Wed, 2018-01-31 14:57
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,511 by smlewis
Mon, 2014-04-21 06:47
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
1,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,472 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,354 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,189 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,325 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
691 by rmoretti
Thu, 2018-06-28 14:22
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
551 by rmoretti
Mon, 2019-08-26 15:01
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,495 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,298 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,473 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
952 by rmoretti
Thu, 2017-02-02 08:52
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,195 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,369 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
2,660 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,383 by nawsad
Fri, 2014-06-20 02:48
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
980 by smlewis
Mon, 2016-08-22 10:39
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
1,638 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,062 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
1,702 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
805 by matteoferla
Thu, 2018-09-13 06:21
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,220 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,207 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,023 by rmoretti
Wed, 2016-06-15 16:06
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
2,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,484 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
900 by rmoretti
Mon, 2017-03-06 08:37
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
536 by rmoretti
Sat, 2019-03-30 12:10
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
1,567 by ndousis
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
1,865 by lvtun
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,540 by exchhattu
Mon, 2014-04-21 06:47
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
2,000 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,349 by ytao
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,277 by rmoretti
Tue, 2014-06-03 11:45
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
2,269 by attesor
Thu, 2015-10-22 03:42
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
1,758 by felipet
Sat, 2016-07-09 09:50
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
2,560 by Victor
Fri, 2014-01-31 10:41
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,423 by SergeyP
Thu, 2016-05-05 02:07
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
1,695 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
1,566 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,665 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
731 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,671 by aminzia
Fri, 2019-07-26 13:14
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
1,872 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
1,076 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
637 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,387 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
1,550 by exchhattu
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
2,118 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,355 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,273 by doranhen
Mon, 2014-04-21 06:47
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
745 by rmoretti
Wed, 2019-04-03 09:58
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