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Rosetta 3 - General
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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1,322 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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464 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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385 |
by jkleman Tue, 2018-07-31 13:19 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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755 |
by rmoretti Mon, 2017-05-15 09:03 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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1,356 |
by smlewis Mon, 2014-04-21 06:47 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
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2,592 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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2,175 |
by rmoretti Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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1,059 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
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1,707 |
by smlewis Mon, 2014-04-21 06:47 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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1,465 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
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975 |
by smlewis Mon, 2014-04-21 06:47 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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408 |
by ac.research Sat, 2017-11-18 06:54 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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1,276 |
by rmoretti Thu, 2015-04-02 12:52 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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685 |
by rmoretti Tue, 2016-07-12 08:48 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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1,005 |
by sid Mon, 2014-04-21 06:47 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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1,265 |
by smlewis Mon, 2014-04-21 06:47 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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1,451 |
by barak Mon, 2014-04-21 06:47 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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1,480 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
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2,780 |
by smlewis Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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1,298 |
by smlewis Mon, 2014-04-21 06:47 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
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1,592 |
by mintseris Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
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579 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
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1,092 |
by mmarlett Thu, 2016-06-16 07:06 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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574 |
by aneamtu Mon, 2018-01-08 23:49 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,406 |
by DanielK Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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1,157 |
by SergeyP Sat, 2015-12-19 05:20 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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1,087 |
by msardejani Wed, 2016-10-05 10:53 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
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1,288 |
by ctaylor Mon, 2014-04-21 06:47 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
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1,242 |
by frits Mon, 2014-04-21 06:48 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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1,493 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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107 |
by ylwang Tue, 2019-10-08 18:34 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
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1,510 |
by smiruthi Mon, 2014-04-21 06:47 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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1,405 |
by pachecoj Thu, 2014-10-09 18:15 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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442 |
by orionshih Tue, 2018-05-01 21:16 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
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2,490 |
by phanvy Thu, 2014-10-16 18:54 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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1,477 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
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1,654 |
by jklett Mon, 2014-04-21 06:47 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
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1,311 |
by gipsonb Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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2,276 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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418 |
by rmoretti Mon, 2018-08-20 11:51 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
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1,312 |
by pachecoj Tue, 2014-11-11 19:30 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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1,762 |
by einew Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
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1,316 |
by banshee Mon, 2014-04-21 06:48 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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503 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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1,336 |
by ytao Mon, 2014-04-21 06:47 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
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1,409 |
by pitmand Tue, 2015-05-26 12:20 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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1,640 |
by Lindsay Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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1,408 |
by Run Mon, 2014-04-21 06:48 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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1,344 |
by cossio Wed, 2014-12-03 14:51 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
858 |
by SergeyP Fri, 2017-03-10 11:16 |
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loop design by varma » Sun, 2012-11-04 21:25 |
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1,891 |
by varma Mon, 2014-04-21 06:47 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
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1,107 |
by gerdos Fri, 2015-10-16 03:01 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
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2,235 |
by ltrabuco Mon, 2014-04-21 06:47 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
2 |
1,109 |
by exchhattu Mon, 2014-04-21 06:47 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
1,901 |
by szypanther Mon, 2014-05-26 22:03 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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1,187 |
by smlewis Mon, 2014-04-21 06:47 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
461 |
by rmoretti Mon, 2018-01-15 14:35 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
457 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
2,060 |
by mgrom92 Wed, 2016-03-23 16:45 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
1,308 |
by doranhen Mon, 2014-04-21 06:47 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
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1,141 |
by Lati Tue, 2016-01-12 13:28 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
1,270 |
by biofisikx Mon, 2014-04-21 06:47 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
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532 |
by sheehajh Thu, 2018-02-08 21:18 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
1,982 |
by smlewis Mon, 2014-04-21 06:47 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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1,726 |
by Trentage Mon, 2014-04-21 06:47 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
820 |
by vmulligan Thu, 2017-04-27 16:41 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
1,704 |
by doranhen Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
2,428 |
by Lindsay Mon, 2014-04-21 06:48 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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1,666 |
by wangyr Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
3,418 |
by pepfolder Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
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1,313 |
by smlewis Thu, 2016-01-14 08:19 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
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1,529 |
by dave Mon, 2014-04-21 06:47 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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824 |
by rmoretti Thu, 2018-06-28 14:09 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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1,204 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
2,864 |
by rmoretti Mon, 2014-04-21 06:47 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
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1,807 |
by Apiwat Thu, 2014-04-17 09:56 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
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1,440 |
by Lindsay Mon, 2014-04-21 06:47 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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495 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
2 |
1,006 |
by Karol Thu, 2016-05-12 07:58 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
114 |
by matteoferla Wed, 2019-08-21 11:58 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
2 |
1,796 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
2 |
2,088 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
1,349 |
by berk Mon, 2014-04-21 06:48 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
2 |
2,118 |
by biofisikx Mon, 2014-04-21 06:47 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
3,530 |
by jwillis Sat, 2015-06-27 21:11 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
1,179 |
by ndousis Mon, 2014-04-21 06:47 |
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Rigid Body & Flexible Minimization by Hanieh » Thu, 2014-02-06 12:37 |
2 |
1,784 |
by Hanieh Fri, 2014-02-28 12:43 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
1,462 |
by lvtun Mon, 2014-04-21 06:47 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
1,157 |
by exchhattu Mon, 2014-04-21 06:47 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
3,885 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
3,258 |
by syoifczeri Mon, 2015-11-02 03:59 |
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
2 |
1,090 |
by aminzia Fri, 2019-07-26 13:14 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
2 |
673 |
by htorres Mon, 2018-02-05 06:53 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
1,782 |
by scombs Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
1,418 |
by smlewis Mon, 2014-04-21 06:47 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
1,550 |
by kalabharath Mon, 2014-04-21 06:47 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
2 |
592 |
by asbelx Thu, 2018-04-26 00:23 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
1,708 |
by jrcf Fri, 2016-02-12 16:41 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
2 |
1,476 |
by TiagoGomes Mon, 2014-04-21 06:47 |
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Rosetta numbering with missing occupancies by ShaneOConnor » Fri, 2011-10-07 16:18 |
2 |
2,107 |
by ShaneOConnor Mon, 2014-04-21 06:47 |
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