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Rosetta 3 - General

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Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
1,322 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
464 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
385 by jkleman
Tue, 2018-07-31 13:19
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
755 by rmoretti
Mon, 2017-05-15 09:03
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,356 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
2,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,175 by rmoretti
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,059 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
1,707 by smlewis
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
1,465 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
975 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
408 by ac.research
Sat, 2017-11-18 06:54
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,276 by rmoretti
Thu, 2015-04-02 12:52
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
685 by rmoretti
Tue, 2016-07-12 08:48
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,005 by sid
Mon, 2014-04-21 06:47
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,265 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,451 by barak
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
1,480 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
2,780 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
1,298 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
1,592 by mintseris
Mon, 2014-04-21 06:47
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
579 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
1,092 by mmarlett
Thu, 2016-06-16 07:06
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
574 by aneamtu
Mon, 2018-01-08 23:49
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
1,406 by DanielK
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,157 by SergeyP
Sat, 2015-12-19 05:20
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
1,087 by msardejani
Wed, 2016-10-05 10:53
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
1,288 by ctaylor
Mon, 2014-04-21 06:47
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
1,242 by frits
Mon, 2014-04-21 06:48
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
1,493 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
107 by ylwang
Tue, 2019-10-08 18:34
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
1,510 by smiruthi
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
1,405 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
442 by orionshih
Tue, 2018-05-01 21:16
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
2,490 by phanvy
Thu, 2014-10-16 18:54
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
1,477 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
1,654 by jklett
Mon, 2014-04-21 06:47
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
1,311 by gipsonb
Mon, 2014-04-21 06:47
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
2,276 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
418 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,312 by pachecoj
Tue, 2014-11-11 19:30
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
1,762 by einew
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,316 by banshee
Mon, 2014-04-21 06:48
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
503 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,336 by ytao
Mon, 2014-04-21 06:47
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
1,409 by pitmand
Tue, 2015-05-26 12:20
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
1,640 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
1,408 by Run
Mon, 2014-04-21 06:48
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,344 by cossio
Wed, 2014-12-03 14:51
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
858 by SergeyP
Fri, 2017-03-10 11:16
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
1,891 by varma
Mon, 2014-04-21 06:47
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,107 by gerdos
Fri, 2015-10-16 03:01
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
2,235 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
1,109 by exchhattu
Mon, 2014-04-21 06:47
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
1,901 by szypanther
Mon, 2014-05-26 22:03
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
461 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
457 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
2,060 by mgrom92
Wed, 2016-03-23 16:45
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
1,308 by doranhen
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,141 by Lati
Tue, 2016-01-12 13:28
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
1,270 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
532 by sheehajh
Thu, 2018-02-08 21:18
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
1,726 by Trentage
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
820 by vmulligan
Thu, 2017-04-27 16:41
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
1,704 by doranhen
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,428 by Lindsay
Mon, 2014-04-21 06:48
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
1,666 by wangyr
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
3,418 by pepfolder
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,313 by smlewis
Thu, 2016-01-14 08:19
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,529 by dave
Mon, 2014-04-21 06:47
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
824 by rmoretti
Thu, 2018-06-28 14:09
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
1,204 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
2,864 by rmoretti
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
1,807 by Apiwat
Thu, 2014-04-17 09:56
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
1,440 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
495 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,006 by Karol
Thu, 2016-05-12 07:58
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
114 by matteoferla
Wed, 2019-08-21 11:58
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
1,796 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
2,088 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,349 by berk
Mon, 2014-04-21 06:48
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
2,118 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,530 by jwillis
Sat, 2015-06-27 21:11
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
1,179 by ndousis
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
1,784 by Hanieh
Fri, 2014-02-28 12:43
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
1,462 by lvtun
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,157 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
3,885 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,258 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,090 by aminzia
Fri, 2019-07-26 13:14
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
673 by htorres
Mon, 2018-02-05 06:53
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
1,782 by scombs
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
1,418 by smlewis
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,550 by kalabharath
Mon, 2014-04-21 06:47
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
592 by asbelx
Thu, 2018-04-26 00:23
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,708 by jrcf
Fri, 2016-02-12 16:41
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
2
1,476 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic Rosetta numbering with missing occupancies
by ShaneOConnor » Fri, 2011-10-07 16:18
2
2,107 by ShaneOConnor
Mon, 2014-04-21 06:47
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