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Rosetta 3 - General
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,684 |
by rmoretti Tue, 2019-07-09 15:48 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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759 |
by rmoretti Fri, 2022-08-26 14:51 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,256 |
by smlewis Mon, 2014-04-21 06:47 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,344 |
by aloshbau Tue, 2021-03-09 02:47 |
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Rosetta Dock by swoody » Tue, 2009-11-10 16:20 |
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3,006 |
by smlewis Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,696 |
by smlewis Mon, 2014-04-21 06:47 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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3,543 |
by smlewis Fri, 2016-07-22 07:31 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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2,017 |
by rmoretti Fri, 2018-08-03 08:59 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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1,069 |
by rmoretti Tue, 2021-11-30 07:41 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
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2,324 |
by rmoretti Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
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3,039 |
by smlewis Fri, 2014-02-28 05:45 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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2,207 |
by rmoretti Mon, 2017-05-15 09:03 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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820 |
by rmoretti Mon, 2022-09-12 06:58 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,612 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
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2,442 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,059 |
by rmoretti Mon, 2014-04-21 06:48 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,815 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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748 |
by matteoferla Fri, 2022-06-17 10:38 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,235 |
by rmoretti Tue, 2021-02-09 10:48 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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966 |
by jadolfbr Sat, 2022-02-12 23:16 |
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rebuilding and refinement by exchhattu » Tue, 2009-10-06 21:13 |
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2,125 |
by smlewis Mon, 2014-04-21 06:47 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,362 |
by smlewis Mon, 2014-04-21 06:47 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
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2,679 |
by mpacella Mon, 2014-04-21 06:47 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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2,442 |
by rmoretti Thu, 2015-04-02 12:52 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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1,828 |
by rmoretti Tue, 2016-07-12 08:48 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
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1,631 |
by rmoretti Mon, 2019-08-26 15:01 |
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backrub and design by jtmacd » Thu, 2009-06-04 08:44 |
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2,268 |
by jtmacd Mon, 2014-04-21 06:47 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,577 |
by rmoretti Thu, 2018-02-22 09:29 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
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1,720 |
by matteoferla Sat, 2020-05-23 03:09 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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1,208 |
by rmoretti Tue, 2021-04-20 13:06 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
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2,700 |
by smlewis Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,602 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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2,127 |
by rmoretti Sun, 2016-02-21 06:38 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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2,019 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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1,487 |
by rmoretti Sat, 2019-03-30 12:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,401 |
by matteoferla Sat, 2020-06-20 03:56 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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1,588 |
by matteoferla Thu, 2021-06-03 08:24 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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1,103 |
by mb0261 Mon, 2022-09-26 07:50 |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
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2,832 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
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2,249 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
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2,632 |
by rmoretti Mon, 2014-04-21 06:47 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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3,453 |
by rmoretti Mon, 2014-04-21 06:48 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
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2,313 |
by rmoretti Mon, 2016-09-05 09:39 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
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2,698 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,505 |
by rmoretti Mon, 2014-04-21 06:47 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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2,129 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,478 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,421 |
by IAndre Mon, 2014-04-21 06:47 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
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2,346 |
by rmoretti Mon, 2014-12-15 02:37 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
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2,144 |
by rmoretti Thu, 2016-04-28 15:49 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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1,504 |
by connyyu Thu, 2019-04-18 03:26 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,376 |
by vmulligan Mon, 2020-06-29 13:09 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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1,280 |
by rmoretti Wed, 2021-06-23 02:17 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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2,145 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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2,911 |
by amelie Tue, 2014-09-30 14:29 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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1,616 |
by Loki01 Wed, 2017-12-13 05:27 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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1,562 |
by rmoretti Mon, 2018-10-08 11:20 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,328 |
by sheehajh Fri, 2020-02-21 12:41 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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932 |
by aneeqh Fri, 2022-09-02 13:36 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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2,176 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
1 |
2,012 |
by rmoretti Fri, 2015-07-03 13:51 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
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3,540 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta movie. by exchhattu » Mon, 2009-09-14 21:02 |
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2,381 |
by smlewis Mon, 2014-04-21 06:47 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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2,096 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
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2,185 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
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3,042 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
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2,488 |
by smlewis Mon, 2014-04-21 06:47 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
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2,103 |
by rmoretti Fri, 2016-04-08 08:43 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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3,773 |
by smlewis Tue, 2017-04-18 08:33 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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1,029 |
by lanselibai Wed, 2021-06-23 14:53 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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836 |
by rmoretti Tue, 2022-09-06 08:13 |
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Filters saying atom type does not exist on residue by mdm95 » Mon, 2024-03-04 15:13 |
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162 |
by mdm95 Tue, 2024-03-05 14:05 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
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2,371 |
by smlewis Mon, 2014-04-21 06:47 |
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null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
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2,178 |
by fred Mon, 2014-04-21 06:47 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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2,202 |
by rmoretti Mon, 2014-04-21 06:48 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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1,709 |
by rmoretti Wed, 2018-11-21 14:14 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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778 |
by ajasja Mon, 2022-05-23 07:19 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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2,213 |
by smlewis Mon, 2014-04-21 06:47 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,729 |
by rmoretti Tue, 2015-07-14 15:27 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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2,278 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
1 |
3,376 |
by smlewis Mon, 2014-04-21 06:47 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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2,144 |
by rmoretti Wed, 2015-02-18 09:19 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
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1,931 |
by smlewis Wed, 2017-06-28 06:59 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,586 |
by rmoretti Mon, 2019-07-08 08:05 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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1,216 |
by zivben Sat, 2021-07-31 08:16 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,648 |
by smlewis Mon, 2014-04-21 06:47 |
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Running Backrub by enoee » Wed, 2010-10-27 07:51 |
1 |
2,267 |
by smlewis Mon, 2014-04-21 06:47 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
1 |
2,492 |
by achambe Wed, 2016-01-13 10:46 |
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Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
1 |
2,306 |
by smlewis Mon, 2014-04-21 06:47 |
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Predicting conformations of mutated residues by Delfosse57 » Tue, 2023-08-22 12:26 |
1 |
409 |
by rmoretti Wed, 2023-08-23 08:26 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,575 |
by rmoretti Mon, 2014-04-21 06:47 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
2,196 |
by rmoretti Mon, 2014-04-21 06:48 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
2,077 |
by nawsad Wed, 2014-06-25 13:26 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
1 |
2,225 |
by rmoretti Wed, 2015-09-02 12:48 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,768 |
by smlewis Wed, 2016-08-24 07:23 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,382 |
by matteoferla Wed, 2020-01-01 04:30 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
1 |
1,110 |
by rmoretti Tue, 2021-02-09 10:29 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
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5,180 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
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2,218 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
1 |
2,430 |
by smlewis Mon, 2014-04-21 06:47 |
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