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Rosetta 3 - General
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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890 |
by rmoretti Mon, 2015-03-30 16:38 |
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ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
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951 |
by rmoretti Tue, 2016-07-12 08:47 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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425 |
by rmoretti Thu, 2018-06-28 14:22 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
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138 |
by rmoretti Mon, 2019-08-26 15:01 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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1,345 |
by smlewis Mon, 2014-04-21 06:47 |
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replace a short helix by berk » Wed, 2013-06-05 10:19 |
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975 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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947 |
by rmoretti Thu, 2015-04-30 07:13 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
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765 |
by rmoretti Wed, 2016-06-15 16:06 |
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Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
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1,415 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
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1,149 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
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1,224 |
by rmoretti Mon, 2014-04-21 06:48 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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621 |
by rmoretti Mon, 2017-03-06 08:37 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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220 |
by rmoretti Sat, 2019-03-30 12:10 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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1,026 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
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1,347 |
by Anonymous Mon, 2014-04-21 06:47 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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1,774 |
by rmoretti Mon, 2014-04-21 06:48 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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1,420 |
by rmoretti Wed, 2014-07-16 08:07 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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451 |
by matteoferla Thu, 2018-09-13 06:21 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
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1,645 |
by Lindsay Mon, 2014-04-21 06:47 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
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1,975 |
by ytao Mon, 2014-04-21 06:48 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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1,827 |
by rmoretti Tue, 2014-06-03 11:45 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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1,686 |
by attesor Thu, 2015-10-22 03:42 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
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1,365 |
by felipet Sat, 2016-07-09 09:50 |
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Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
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2,014 |
by Victor Fri, 2014-01-31 10:41 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
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1,049 |
by SergeyP Thu, 2016-05-05 02:07 |
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all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
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1,382 |
by zwenthor Mon, 2014-04-21 06:47 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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580 |
by eminegenetics Wed, 2018-07-18 13:48 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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136 |
by dfcoelho Tue, 2019-11-19 10:16 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
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1,970 |
by rmoretti Mon, 2014-04-21 06:47 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
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1,270 |
by exchhattu Mon, 2014-04-21 06:47 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
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1,361 |
by rmoretti Mon, 2014-04-21 06:47 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
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1,180 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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1,315 |
by rmoretti Fri, 2015-01-09 10:59 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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285 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
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1,386 |
by smlewis Mon, 2014-04-21 06:47 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
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1,480 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
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2,856 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
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1,835 |
by doranhen Mon, 2014-04-21 06:47 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
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306 |
by rmoretti Wed, 2019-04-03 09:58 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
2 |
1,435 |
by samuelrpita Thu, 2015-08-06 14:23 |
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Abinitio Structure Prediction - Sanity Test by westleys » Tue, 2010-06-01 00:28 |
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1,438 |
by westleys Mon, 2014-04-21 06:47 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
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611 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
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1,449 |
by jarod Mon, 2014-04-21 06:47 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
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2,134 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
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1,229 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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533 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
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993 |
by DmitriiN Wed, 2016-06-01 15:46 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
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698 |
by ac.research Fri, 2017-08-18 00:53 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
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1,569 |
by smiruthi Mon, 2014-04-21 06:47 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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825 |
by lah435 Mon, 2017-04-03 19:50 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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1,527 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
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633 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
1,289 |
by frits Mon, 2014-04-21 06:48 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
1,245 |
by MarkW Fri, 2015-07-03 15:36 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
1,235 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
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1,336 |
by ctaylor Mon, 2014-04-21 06:47 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
2 |
1,279 |
by dnasmith Mon, 2014-04-21 06:47 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
1,357 |
by gipsonb Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,460 |
by DanielK Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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4,109 |
by lanselibai Mon, 2014-09-22 08:13 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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620 |
by aneamtu Mon, 2018-01-08 23:49 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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1,816 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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1,412 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
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1,319 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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1,150 |
by jadolfbr Sun, 2016-12-11 10:53 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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235 |
by ylwang Tue, 2019-10-08 18:34 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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1,530 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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489 |
by orionshih Tue, 2018-05-01 21:16 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
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1,629 |
by mintseris Mon, 2014-04-21 06:47 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
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1,459 |
by jtmacd Mon, 2014-04-21 06:47 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
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1,318 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
1,081 |
by smlewis Sun, 2017-01-15 18:10 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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1,521 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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464 |
by rmoretti Mon, 2018-08-20 11:51 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
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863 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
2 |
1,703 |
by jklett Mon, 2014-04-21 06:47 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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3,187 |
by knutjbj Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
1,354 |
by banshee Mon, 2014-04-21 06:48 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
1,139 |
by mmarlett Thu, 2016-06-16 07:06 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
1,380 |
by ytao Mon, 2014-04-21 06:47 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
570 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
1,960 |
by szypanther Mon, 2014-05-26 22:03 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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1,723 |
by wangyr Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
1,691 |
by Lindsay Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
1,458 |
by Run Mon, 2014-04-21 06:48 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
2 |
1,159 |
by exchhattu Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
1,947 |
by varma Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
1,193 |
by SergeyP Sat, 2015-12-19 05:20 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
1,119 |
by msardejani Wed, 2016-10-05 10:53 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
513 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
2 |
1,344 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
1,490 |
by Lindsay Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
3,489 |
by pepfolder Mon, 2014-04-21 06:47 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
2 |
1,500 |
by barak Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
1,362 |
by doranhen Mon, 2014-04-21 06:47 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
1,454 |
by pachecoj Thu, 2014-10-09 18:15 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
508 |
by rmoretti Mon, 2018-01-15 14:35 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
1,774 |
by doranhen Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
2,499 |
by Lindsay Mon, 2014-04-21 06:48 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
2,563 |
by phanvy Thu, 2014-10-16 18:54 |
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