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Rosetta 3 - General

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Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,864 by rmoretti
Sat, 2017-12-02 10:22
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,864 by jalan
Thu, 2020-04-23 05:19
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,875 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,881 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,881 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,892 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,898 by smlewis
Wed, 2017-06-28 06:59
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,899 by rmoretti
Tue, 2016-07-12 08:40
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
1,900 by rmoretti
Wed, 2021-03-17 13:52
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,906 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,908 by matteoferla
Wed, 2019-08-21 11:58
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,908 by rmoretti
Tue, 2021-02-09 13:45
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,916 by ssrb
Tue, 2016-07-12 10:02
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,916 by Trentage
Mon, 2014-04-21 06:47
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,937 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,939 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,946 by smlewis
Mon, 2014-04-21 06:47
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04
2
1,948 by matteoferla
Thu, 2021-10-07 09:31
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
1,949 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,951 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,952 by smlewis
Tue, 2018-06-19 10:31
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,968 by rmoretti
Sat, 2015-09-19 13:20
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,970 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,972 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,979 by smlewis
Mon, 2014-04-21 06:48
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
1,981 by rmoretti
Fri, 2018-08-03 08:59
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,982 by smlewis
Sun, 2016-03-13 15:25
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,982 by smlewis
Tue, 2015-12-22 08:31
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,984 by ylwang
Tue, 2019-10-08 18:34
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,986 by rmoretti
Fri, 2015-07-03 13:51
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
0
1,986 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,986 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,988 by rmoretti
Thu, 2015-08-06 09:28
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,989 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,989 by smlewis
Sun, 2016-01-10 10:02
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,991 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,995 by David
Tue, 2019-01-22 12:23
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
2,000 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
2,000 by smlewis
Mon, 2014-04-21 06:47
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
2,003 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
5
2,004 by matteoferla
Fri, 2022-07-01 13:49
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
2,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
2,006 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
2,006 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
2,006 by smlewis
Mon, 2018-04-16 16:32
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
2,007 by smlewis
Mon, 2014-04-21 06:47
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
2,008 by vmulligan
Tue, 2019-03-26 11:30
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
2,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
2,019 by smlewis
Mon, 2014-04-21 06:47
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
2,021 by nawsad
Fri, 2014-06-20 03:00
Normal topic Rotate chain
by Germanico » Sun, 2021-05-09 16:36
3
2,022 by danpf
Mon, 2021-05-10 10:04
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
2,025 by ac.research
Fri, 2020-02-14 23:33
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
2,029 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
2,030 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
2,031 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
2,032 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
2,039 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
2,040 by rmoretti
Wed, 2017-03-29 12:37
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
2,040 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
2,043 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
2,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
2,051 by smlewis
Mon, 2014-04-21 06:47
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
2,058 by nawsad
Wed, 2014-06-25 13:26
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
2,060 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic pmut and scoring
by ldlamini » Tue, 2021-09-14 00:46
3
2,062 by matteoferla
Mon, 2021-09-20 06:05
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
2,066 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,066 by smlewis
Mon, 2014-04-21 06:47
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
2,067 by ylwang
Tue, 2020-03-24 19:35
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,072 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
2,073 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
2,074 by rmoretti
Fri, 2015-07-03 13:14
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
2,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
5
2,074 by aastha.pal
Mon, 2022-06-27 09:55
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
2,075 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,075 by rmoretti
Mon, 2016-11-14 15:12
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
2,083 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
2,083 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
2,083 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
2,086 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
2,089 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
2,093 by orionshih
Tue, 2018-05-01 21:16
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,098 by rmoretti
Sun, 2016-02-21 06:38
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
2,098 by smlewis
Mon, 2014-04-21 06:47
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
2,104 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
2,106 by rmoretti
Thu, 2018-06-28 14:28
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
2,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
2,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
2,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
2,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
1
2,115 by paulbo
Sun, 2024-02-04 22:03
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,116 by rmoretti
Thu, 2016-04-28 15:49
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
2,116 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
2,116 by sheehajh
Thu, 2018-02-08 21:18
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
2,121 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
2,123 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
2,125 by Lati
Fri, 2015-11-20 03:32
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
2,126 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
2,128 by rmoretti
Tue, 2016-07-12 08:43
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