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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
4,382 |
by rmoretti Mon, 2018-01-15 15:34 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,797 |
by rmoretti Mon, 2018-01-15 15:24 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
2,082 |
by rmoretti Mon, 2018-01-15 14:35 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
2 |
2,250 |
by aneamtu Mon, 2018-01-08 23:49 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
3 |
4,145 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,789 |
by rmoretti Sat, 2017-12-16 12:19 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
5 |
4,381 |
by Loki01 Thu, 2017-12-14 06:20 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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1,134 |
by bio_james Wed, 2017-12-13 09:13 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
1 |
1,588 |
by Loki01 Wed, 2017-12-13 05:27 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
1,324 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
2,252 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,863 |
by rmoretti Sat, 2017-12-02 10:22 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,892 |
by everyday847 Tue, 2017-11-28 13:07 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
0 |
1,143 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
1 |
1,657 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
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3,396 |
by smlewis Sun, 2017-11-19 20:08 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
1 |
1,597 |
by ac.research Sat, 2017-11-18 06:54 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
3,213 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
0 |
1,125 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
3 |
4,578 |
by smlewis Wed, 2017-11-08 12:08 |
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Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
1 |
4,903 |
by rmoretti Mon, 2017-11-06 07:36 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
1 |
2,028 |
by jadolfbr Wed, 2017-11-01 10:11 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
1,096 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
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2,780 |
by rmoretti Mon, 2017-10-30 12:02 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,385 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
0 |
1,393 |
by fmerino Mon, 2017-10-16 04:02 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
3,434 |
by ac.research Sun, 2017-09-24 11:25 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
5,311 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,771 |
by rmoretti Fri, 2017-09-08 15:15 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,713 |
by rmoretti Wed, 2017-09-06 08:47 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
4 |
4,512 |
by ac.research Mon, 2017-09-04 16:43 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
11 |
8,285 |
by smlewis Tue, 2017-08-29 08:56 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
1 |
2,980 |
by rmoretti Mon, 2017-08-28 09:32 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,553 |
by rmoretti Mon, 2017-08-21 09:55 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,795 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
7,213 |
by ac.research Fri, 2017-08-18 00:57 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,293 |
by ac.research Fri, 2017-08-18 00:53 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
4,294 |
by smlewis Wed, 2017-08-16 08:30 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
5 |
8,484 |
by rmoretti Mon, 2017-08-14 09:06 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
4,231 |
by matteoferla Sat, 2017-08-05 07:18 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
5 |
4,760 |
by rmoretti Thu, 2017-08-03 09:01 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
3 |
2,798 |
by rmoretti Thu, 2017-08-03 08:50 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
1 |
4,430 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
4 |
4,611 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,630 |
by jeliazkov Tue, 2017-07-18 09:51 |
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B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
12 |
9,325 |
by brandon.frenz Sat, 2017-07-08 13:49 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
3,104 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,523 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,754 |
by linucks Mon, 2017-07-03 09:50 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
1 |
1,897 |
by smlewis Wed, 2017-06-28 06:59 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
4,027 |
by rmoretti Wed, 2017-06-28 01:33 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
1 |
2,179 |
by rmoretti Mon, 2017-05-15 09:03 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
2,264 |
by MA Thu, 2017-04-27 18:53 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
2,614 |
by vmulligan Thu, 2017-04-27 16:41 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
1 |
2,082 |
by rmoretti Fri, 2017-04-21 07:52 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
3 |
3,121 |
by rmoretti Tue, 2017-04-18 13:49 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
1 |
3,732 |
by smlewis Tue, 2017-04-18 08:33 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
1 |
2,680 |
by rmoretti Fri, 2017-04-14 08:37 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,371 |
by lah435 Mon, 2017-04-03 19:50 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,363 |
by ac.research Fri, 2017-03-31 07:36 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
1 |
2,039 |
by rmoretti Wed, 2017-03-29 12:37 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
5 |
4,661 |
by pachecoj Wed, 2017-03-29 12:32 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
5 |
4,769 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,669 |
by rmoretti Tue, 2017-03-28 09:02 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,778 |
by smlewis Wed, 2017-03-22 14:02 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
1 |
1,990 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
2,677 |
by SergeyP Fri, 2017-03-10 11:16 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
5 |
5,383 |
by cannond Wed, 2017-03-08 03:00 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
4,311 |
by freedman Mon, 2017-03-06 13:24 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
1 |
1,855 |
by rmoretti Mon, 2017-03-06 08:37 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,635 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
4,147 |
by cannond Wed, 2017-03-01 08:05 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
7 |
6,060 |
by sunhwan Mon, 2017-02-27 11:02 |
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Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
1 |
1,838 |
by rmoretti Thu, 2017-02-02 08:52 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
10 |
9,674 |
by rmoretti Thu, 2017-02-02 08:32 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
6,346 |
by smlewis Sun, 2017-01-15 18:14 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,702 |
by smlewis Sun, 2017-01-15 18:10 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
7,241 |
by sk0319 Wed, 2017-01-11 10:52 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,324 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
3,086 |
by allan.ferrari Tue, 2017-01-03 05:02 |
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Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
12 |
10,015 |
by smlewis Thu, 2016-12-22 13:11 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
3,187 |
by smlewis Tue, 2016-12-20 10:40 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
5,520 |
by Karol Thu, 2016-12-15 01:35 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
6,072 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
0 |
1,309 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,833 |
by jadolfbr Sun, 2016-12-11 10:53 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
3,999 |
by zhiguang Tue, 2016-11-15 12:27 |
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Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
1 |
2,072 |
by rmoretti Mon, 2016-11-14 15:12 |
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Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
2,064 |
by rmoretti Mon, 2016-11-14 14:26 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,786 |
by rmoretti Mon, 2016-11-14 14:21 |
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Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,364 |
by rmoretti Fri, 2016-10-14 16:43 |
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"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
2,287 |
by rmoretti Fri, 2016-10-14 15:46 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
2,587 |
by msardejani Wed, 2016-10-05 10:53 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
3,410 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
1 |
2,030 |
by rmoretti Tue, 2016-09-13 07:41 |
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restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
4 |
4,829 |
by rmoretti Thu, 2016-09-08 10:56 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,832 |
by rmoretti Thu, 2016-09-08 07:56 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,287 |
by rmoretti Mon, 2016-09-05 09:39 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
16,407 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,799 |
by possu Tue, 2016-08-30 16:57 |
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