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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
1,344 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
1,490 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
3,489 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,500 by barak
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
1,361 by doranhen
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
1,454 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
507 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,041 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
1,774 by doranhen
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,499 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
2,562 by phanvy
Thu, 2014-10-16 18:54
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
580 by sheehajh
Thu, 2018-02-08 21:18
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,354 by pachecoj
Tue, 2014-11-11 19:30
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,576 by dave
Mon, 2014-04-21 06:47
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
545 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
1,315 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
2,920 by rmoretti
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
1,871 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
898 by rmoretti
Thu, 2018-06-28 14:09
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
1,462 by pitmand
Tue, 2015-05-26 12:20
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
198 by matteoferla
Wed, 2019-08-21 11:58
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
1,852 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,592 by jwillis
Sat, 2015-06-27 21:11
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,414 by cossio
Wed, 2014-12-03 14:51
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
928 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
2,137 by smlewis
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
1,767 by Trentage
Mon, 2014-04-21 06:47
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,162 by gerdos
Fri, 2015-10-16 03:01
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
2,336 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,399 by berk
Mon, 2014-04-21 06:48
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
1,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
1,848 by Hanieh
Fri, 2014-02-28 12:43
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
2,151 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Rosetta numbering with missing occupancies
by ShaneOConnor » Fri, 2011-10-07 16:18
2
2,165 by ShaneOConnor
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,192 by Lati
Tue, 2016-01-12 13:28
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
2,302 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
1,833 by scombs
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
1,457 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
875 by vmulligan
Thu, 2017-04-27 16:41
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
654 by asbelx
Thu, 2018-04-26 00:23
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
2,174 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,597 by kalabharath
Mon, 2014-04-21 06:47
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
729 by htorres
Mon, 2018-02-05 06:53
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
1,689 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,380 by smlewis
Thu, 2016-01-14 08:19
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
1,345 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,207 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,060 by Karol
Thu, 2016-05-12 07:58
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
2
1,528 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
1,228 by ndousis
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,161 by aminzia
Fri, 2019-07-26 13:14
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
2,101 by jos
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
1,702 by phanvy
Mon, 2014-04-21 03:58
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
810 by renedominik
Sat, 2018-07-07 03:03
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
1,845 by vanita
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
2,644 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
3,975 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,407 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
1,461 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
1,339 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
1,593 by petrikigor
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
1,135 by aneamtu
Thu, 2018-01-18 00:56
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
1,265 by jtmacd
Mon, 2014-04-21 06:47
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
1,028 by sdh_h
Thu, 2016-08-04 11:22
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
6,626 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
504 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
2,144 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
2,069 by Matthys
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
1,497 by lvtun
Mon, 2014-04-21 06:47
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
2,356 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
1,227 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,769 by jrcf
Fri, 2016-02-12 16:41
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
1,613 by jhbrown
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
1,217 by aaj
Mon, 2016-02-22 07:50
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
1,487 by phanvy
Sun, 2014-06-22 23:29
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
1,402 by rmoretti
Tue, 2015-08-18 17:11
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
1,720 by pledor
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
2,209 by abiadak
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
1,318 by straore
Fri, 2015-04-17 01:54
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
2,303 by mansi
Mon, 2014-04-21 06:47
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
1,286 by jrcf
Tue, 2016-05-03 17:40
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
2,148 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
1,911 by jrcf
Fri, 2015-10-16 10:57
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
1,754 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
186 by mao_x
Thu, 2019-08-08 01:37
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
1,875 by gw
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
1,578 by Anatol
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
2,726 by Apiwat
Sat, 2014-02-08 01:41
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
1,716 by ctaylor
Mon, 2014-04-21 06:47
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
1,812 by vsjasion
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,140 by jarek
Mon, 2014-04-21 06:48
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,162 by road runner
Tue, 2015-12-01 10:08
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
1,370 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
1,262 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
2,131 by inder
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
3,206 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
2,379 by rmoretti
Wed, 2015-01-21 10:05
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
796 by MA
Thu, 2017-04-27 18:53
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
1,548 by molon
Mon, 2014-04-21 06:47
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