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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
2,016 by Matthys
Mon, 2014-04-21 06:47
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
1,762 by einew
Mon, 2014-04-21 06:47
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
2,261 by mansi
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
1,416 by jtmacd
Mon, 2014-04-21 06:47
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
1,901 by szypanther
Mon, 2014-05-26 22:03
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
556 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
620 by ac.research
Sat, 2019-08-03 08:12
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
1,408 by Run
Mon, 2014-04-21 06:48
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
300 by rmoretti
Fri, 2019-03-29 14:43
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
1,682 by pledor
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,157 by SergeyP
Sat, 2015-12-19 05:20
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
1,087 by msardejani
Wed, 2016-10-05 10:53
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
1,742 by zhisheng
Mon, 2014-04-21 06:47
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
1,595 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
1,923 by ytao
Mon, 2014-04-21 06:48
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,140 by knutjbj
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
1,405 by pachecoj
Thu, 2014-10-09 18:15
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
252 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,427 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
2,490 by phanvy
Thu, 2014-10-16 18:54
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
1,316 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
1,425 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
1,668 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
1,904 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
1,298 by smlewis
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,312 by pachecoj
Tue, 2014-11-11 19:30
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
2
629 by rmoretti
Mon, 2018-01-15 14:23
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
3,418 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
2,780 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
1,772 by doranhen
Mon, 2014-04-21 06:47
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
1,499 by molon
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
1,390 by justin
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,451 by barak
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
1,807 by Apiwat
Thu, 2014-04-17 09:56
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
1,409 by pitmand
Tue, 2015-05-26 12:20
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
1,316 by swoody
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
1,372 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,530 by jwillis
Sat, 2015-06-27 21:11
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,344 by cossio
Wed, 2014-12-03 14:51
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
858 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,107 by gerdos
Fri, 2015-10-16 03:01
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
1,396 by jarod
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
1,480 by rmoretti
Mon, 2014-04-21 06:47
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
2,157 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
1,784 by Hanieh
Fri, 2014-02-28 12:43
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
2,060 by mgrom92
Wed, 2016-03-23 16:45
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,141 by Lati
Tue, 2016-01-12 13:28
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
1,510 by smiruthi
Mon, 2014-04-21 06:47
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
2,276 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
1,311 by gipsonb
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
1,406 by DanielK
Mon, 2014-04-21 06:47
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
119 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
820 by vmulligan
Thu, 2017-04-27 16:41
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
1,242 by frits
Mon, 2014-04-21 06:48
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,313 by smlewis
Thu, 2016-01-14 08:19
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
1,493 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
2,149 by ctaylor
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,006 by Karol
Thu, 2016-05-12 07:58
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
1,648 by phanvy
Mon, 2014-04-21 03:58
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
217 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
2,235 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
514 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
1,370 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
2,057 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,316 by banshee
Mon, 2014-04-21 06:48
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
246 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
3,885 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,258 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,336 by ytao
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
1,666 by wangyr
Mon, 2014-04-21 06:47
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
1,640 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
458 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
1,891 by varma
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,231 by frichter
Mon, 2014-04-21 06:47
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
553 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
1,179 by pachecoj
Wed, 2014-10-15 15:12
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
2,576 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,708 by jrcf
Fri, 2016-02-12 16:41
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
579 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
971 by sdh_h
Thu, 2016-08-04 11:22
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
1,308 by doranhen
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
1,440 by Lindsay
Mon, 2014-04-21 06:47
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
1,329 by zwenthor
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
1,407 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
1,171 by aaj
Mon, 2016-02-22 07:50
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
574 by aneamtu
Mon, 2018-01-08 23:49
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
1,224 by exchhattu
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
1,442 by phanvy
Sun, 2014-06-22 23:29
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
1,362 by rmoretti
Tue, 2015-08-18 17:11
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
1,704 by doranhen
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
1,270 by straore
Fri, 2015-04-17 01:54
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,529 by dave
Mon, 2014-04-21 06:47
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
442 by orionshih
Tue, 2018-05-01 21:16
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
1,227 by jrcf
Tue, 2016-05-03 17:40
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
2,864 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
1,816 by jrcf
Fri, 2015-10-16 10:57
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
106 by ylwang
Tue, 2019-10-08 18:34
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
1,462 by lvtun
Mon, 2014-04-21 06:47
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