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Rosetta 3 - General

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Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
607 by mao_x
Thu, 2019-08-08 01:37
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,097 by gw
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
1,841 by Anatol
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
3,273 by Apiwat
Sat, 2014-02-08 01:41
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,076 by vsjasion
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,393 by jarek
Mon, 2014-04-21 06:48
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,409 by road runner
Tue, 2015-12-01 10:08
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
1,586 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
1,472 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
2,364 by inder
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
3,574 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
2,647 by rmoretti
Wed, 2015-01-21 10:05
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
1,516 by biofisikx
Mon, 2014-04-21 06:47
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,024 by MA
Thu, 2017-04-27 18:53
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,261 by aloshbau
Mon, 2015-12-14 23:30
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
824 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
2,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
1,577 by rmoretti
Thu, 2015-08-06 09:21
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
1,990 by Trentage
Mon, 2014-04-21 06:47
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
358 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
2,340 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
906 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
1,220 by ac.research
Sat, 2019-08-03 08:12
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
1,471 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
1,799 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
2,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
641 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
1,862 by alejandro
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
1,932 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,274 by aloshbau
Sun, 2016-02-14 20:14
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
1,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
232 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
4,030 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
1,710 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
1,702 by MRH
Mon, 2014-04-21 06:48
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
1,662 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
1,641 by Apiwat
Thu, 2014-04-17 09:56
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
1,205 by Awagner7
Tue, 2020-04-28 10:51
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
136 by bjharris
Wed, 2020-09-09 20:04
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
1,897 by ndousis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
1,648 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
1,728 by phanvy
Wed, 2014-12-10 00:17
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
1,433 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
1,095 by ac.research
Fri, 2017-03-31 07:36
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
627 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
1,616 by louisclark
Mon, 2014-04-21 06:47
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
1,766 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
2,390 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
2,399 by biofisikx
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
2,355 by rmoretti
Tue, 2016-07-12 08:18
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
2,083 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
1,823 by aroop
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
1,537 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
1,781 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
2
1,757 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,348 by Al52
Tue, 2015-12-01 18:22
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
1,444 by ndousis
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
1,569 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,416 by exchhattu
Mon, 2014-04-21 06:47
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
553 by nleroy
Fri, 2019-11-08 12:44
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
1,825 by attesor
Fri, 2014-10-31 04:23
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
1,501 by qlj
Thu, 2014-03-06 22:20
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
1,697 by lah435
Thu, 2015-02-12 09:16
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
157 by Smbat
Thu, 2020-07-30 03:07
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
1,727 by doranhen
Mon, 2014-04-21 06:47
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
1,685 by jtmacd
Mon, 2014-04-21 06:48
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
2,076 by vanita
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,499 by aminzia
Fri, 2019-07-26 13:14
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
1,770 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
2,404 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
421 by smlewis
Wed, 2019-12-04 13:07
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
2,842 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
2,061 by zhisheng
Mon, 2014-04-21 06:47
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
1,576 by aaj
Mon, 2016-02-29 04:45
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
389 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
573 by matteoferla
Thu, 2019-08-22 05:39
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
66 by JW_24
Wed, 2020-09-23 01:27
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,217 by ytao
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,109 by rmoretti
Tue, 2014-06-03 11:45
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
2,056 by attesor
Thu, 2015-10-22 03:42
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
1,617 by felipet
Sat, 2016-07-09 09:50
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
2,354 by Victor
Fri, 2014-01-31 10:41
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,286 by SergeyP
Thu, 2016-05-05 02:07
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
2,366 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
2,326 by Matthys
Mon, 2014-04-21 06:47
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
1,463 by jtmacd
Mon, 2014-04-21 06:47
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
1,857 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
906 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
463 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,241 by rmoretti
Mon, 2014-04-21 06:47
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
1,583 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
1,434 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,535 by rmoretti
Fri, 2015-01-09 10:59
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
1,936 by pledor
Mon, 2014-04-21 06:47
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
588 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
1,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
1,727 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
2,567 by mansi
Mon, 2014-04-21 06:47
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
1,677 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,187 by smlewis
Mon, 2014-04-21 06:47
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