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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
630 by matteoferla
Wed, 2020-01-29 12:18
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,645 by frichter
Mon, 2014-04-21 06:47
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
793 by matteoferla
Thu, 2019-08-22 05:39
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
324 by JW_24
Wed, 2020-09-23 01:27
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
1,544 by smlewis
Mon, 2014-04-21 06:47
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
1,999 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,349 by ytao
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,277 by rmoretti
Tue, 2014-06-03 11:45
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
2,269 by attesor
Thu, 2015-10-22 03:42
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
1,756 by felipet
Sat, 2016-07-09 09:50
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
2,560 by Victor
Fri, 2014-01-31 10:41
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,423 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
1,075 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
637 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,387 by rmoretti
Mon, 2014-04-21 06:47
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
2,512 by biofisikx
Mon, 2014-04-21 06:47
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
1,694 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
1,566 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,665 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
731 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
1,732 by smlewis
Mon, 2014-04-21 06:47
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
1,872 by rmoretti
Mon, 2014-04-21 06:47
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
1,627 by exchhattu
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,273 by doranhen
Mon, 2014-04-21 06:47
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
745 by rmoretti
Wed, 2019-04-03 09:58
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
1,804 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
1,567 by ndousis
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,540 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,355 by smlewis
Mon, 2014-04-21 06:47
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
1,101 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
2,571 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
1,610 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
1,074 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,671 by aminzia
Fri, 2019-07-26 13:14
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
1,353 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
1,068 by ac.research
Fri, 2017-08-18 00:53
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
1,955 by smiruthi
Mon, 2014-04-21 06:47
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
1,191 by lah435
Mon, 2017-04-03 19:50
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
1,898 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
1,043 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
587 by ac.research
Fri, 2020-02-14 23:33
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
1,716 by ctaylor
Mon, 2014-04-21 06:47
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
1,677 by frits
Mon, 2014-04-21 06:48
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
1,593 by MarkW
Fri, 2015-07-03 15:36
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
1,593 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,592 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
1,708 by gipsonb
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
1,851 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
4,793 by lanselibai
Mon, 2014-09-22 08:13
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
1,048 by aneamtu
Mon, 2018-01-08 23:49
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
914 by brspurri
Thu, 2020-08-20 13:22
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
812 by ylwang
Tue, 2019-10-08 18:34
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
2,459 by Matthys
Mon, 2014-04-21 06:47
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
1,866 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
881 by orionshih
Tue, 2018-05-01 21:16
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
2,178 by einew
Mon, 2014-04-21 06:47
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
1,805 by phanvy
Wed, 2014-10-15 21:41
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
1,720 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
1,597 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
488 by jalan
Thu, 2020-04-23 05:19
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
1,777 by jtmacd
Mon, 2014-04-21 06:47
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
1,712 by aaj
Mon, 2016-02-22 07:43
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
1,484 by smlewis
Sun, 2017-01-15 18:10
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
1,893 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
836 by rmoretti
Mon, 2018-08-20 11:51
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
2,057 by pledor
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
2,087 by jklett
Mon, 2014-04-21 06:47
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
2,695 by mansi
Mon, 2014-04-21 06:47
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
1,361 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
764 by jalan
Sun, 2020-04-12 08:01
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,696 by ytao
Mon, 2014-04-21 06:47
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
997 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
603 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,516 by knutjbj
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,683 by banshee
Mon, 2014-04-21 06:48
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
1,501 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
1,549 by exchhattu
Mon, 2014-04-21 06:47
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
2,392 by szypanther
Mon, 2014-05-26 22:03
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
2,135 by wangyr
Mon, 2014-04-21 06:47
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
2,039 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
1,831 by Run
Mon, 2014-04-21 06:48
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
2,425 by varma
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,562 by SergeyP
Sat, 2015-12-19 05:20
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
1,492 by msardejani
Wed, 2016-10-05 10:53
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
905 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
1,665 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
1,810 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
1,838 by justin
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
3,927 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,811 by barak
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
1,732 by doranhen
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
1,816 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
884 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
951 by sheehajh
Thu, 2018-02-08 21:18
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
1,828 by jarod
Mon, 2014-04-21 06:47
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,441 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
1,823 by zdn3023
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,146 by doranhen
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,019 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,076 by phanvy
Thu, 2014-10-16 18:54
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