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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort descending
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,301 by smlewis
Mon, 2014-04-21 06:47
Hot topic RNA Denovo RMSD data
by eremma » Thu, 2012-08-02 01:40
31
15,863 by eremma
Mon, 2014-04-21 06:47
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
5,498 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
2,744 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,316 by smlewis
Mon, 2014-04-21 06:47
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
2,515 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
1,607 by smlewis
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19
22
10,940 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
4,179 by smlewis
Mon, 2014-04-21 06:47
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
6,190 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
2,683 by smlewis
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
2,931 by gw
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
5,742 by jamsmad
Mon, 2014-04-21 06:47
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
1,477 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
6,524 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
2,051 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
1,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
1,919 by Anatol
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
9,932 by tevang
Mon, 2014-04-21 06:47
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
2,573 by bo
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
4,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
3,254 by glemmon
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,324 by rmoretti
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
3,310 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
4,308 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,430 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
1,599 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
2,360 by varma
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,913 by dave
Mon, 2014-04-21 06:47
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10
26
14,170 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
2,872 by pardave
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,445 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,411 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
2,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,419 by xujc
Mon, 2014-04-21 06:47
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
4,293 by qlj
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
1,785 by smlewis
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
2,816 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
1,840 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
3,270 by rmoretti
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,921 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,223 by doranhen
Mon, 2014-04-21 06:47
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55
13
7,070 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
7,867 by sabine
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
7,683 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
3,699 by doranhen
Mon, 2014-04-21 06:47
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
3,756 by tevang
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,947 by kalabharath
Mon, 2014-04-21 06:47
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
2,047 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
1,907 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
1,815 by coxford
Mon, 2014-04-21 06:47
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
4,167 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
6,503 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
1,825 by msun
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
5,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
1,799 by doranhen
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
6,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
2,317 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
2,338 by tsjain
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
3,608 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
2,767 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,654 by ytao
Mon, 2014-04-21 06:47
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
2,178 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
7,334 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
2,554 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
12,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
5,771 by qlj
Mon, 2014-04-21 06:47
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
32,890 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,259 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
4,721 by ritacc18
Mon, 2014-04-21 06:47
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
4,796 by smlewis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
1,727 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,634 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,379 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
5,134 by smlewis
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
9,041 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
2,259 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
1,811 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
10,266 by nawsad
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
3,590 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
3,334 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
1,727 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,192 by rmoretti
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
4,850 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
2,232 by eunwook
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
7,504 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,923 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
5,710 by rmoretti
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
10,315 by pledor
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
5,949 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,261 by smlewis
Mon, 2014-04-21 06:47
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,170 by smlewis
Mon, 2014-04-21 06:48
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
1,620 by frits
Mon, 2014-04-21 06:48
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,629 by banshee
Mon, 2014-04-21 06:48
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
17,398 by omirus
Mon, 2014-04-21 06:48
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,717 by berk
Mon, 2014-04-21 06:48
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
2,729 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,373 by smlewis
Mon, 2014-04-21 06:48
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
3,597 by fukamitka
Mon, 2014-04-21 06:48
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