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Rosetta 3 - General
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,859 |
by rmoretti Thu, 2016-09-08 07:56 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,313 |
by rmoretti Mon, 2016-09-05 09:39 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
16,495 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,828 |
by possu Tue, 2016-08-30 16:57 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
5,083 |
by smlewis Tue, 2016-08-30 13:47 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,779 |
by Karol Mon, 2016-08-29 05:27 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
3 |
3,352 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,767 |
by smlewis Wed, 2016-08-24 07:23 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,879 |
by smlewis Mon, 2016-08-22 10:39 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,708 |
by smlewis Mon, 2016-08-22 10:28 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
7 |
6,562 |
by krdav Wed, 2016-08-17 12:57 |
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"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
1 |
2,249 |
by smlewis Thu, 2016-08-11 13:16 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,637 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
4 |
4,252 |
by msardejani Sun, 2016-08-07 17:49 |
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reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,548 |
by sdh_h Thu, 2016-08-04 11:22 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
3,423 |
by smlewis Fri, 2016-07-29 07:43 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,539 |
by smlewis Fri, 2016-07-22 07:31 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,707 |
by smlewis Wed, 2016-07-13 23:41 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
6,101 |
by obdulia Wed, 2016-07-13 09:11 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
1,942 |
by ssrb Tue, 2016-07-12 10:02 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,827 |
by rmoretti Tue, 2016-07-12 08:48 |
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ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
2,359 |
by rmoretti Tue, 2016-07-12 08:47 |
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Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
1 |
2,155 |
by rmoretti Tue, 2016-07-12 08:43 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,918 |
by rmoretti Tue, 2016-07-12 08:40 |
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Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
1 |
2,108 |
by rmoretti Tue, 2016-07-12 08:36 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
4,140 |
by rmoretti Tue, 2016-07-12 08:18 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
3,077 |
by felipet Sat, 2016-07-09 09:50 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
1,297 |
by Jhreed Fri, 2016-07-08 13:44 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
3,177 |
by smlewis Thu, 2016-06-30 08:44 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,893 |
by rmoretti Wed, 2016-06-29 10:20 |
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New parametrization problems by DmitriiN » Wed, 2016-06-08 05:09 |
25 |
20,910 |
by smlewis Tue, 2016-06-28 09:05 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,682 |
by mmarlett Thu, 2016-06-16 07:06 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
1 |
1,931 |
by rmoretti Wed, 2016-06-15 16:06 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
3 |
3,491 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,503 |
by DmitriiN Wed, 2016-06-01 15:46 |
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modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error by Karol » Wed, 2016-05-04 08:47 |
17 |
16,321 |
by smlewis Tue, 2016-05-17 08:06 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
2 |
2,659 |
by Karol Thu, 2016-05-12 07:58 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
0 |
1,364 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
8 |
10,029 |
by rmoretti Mon, 2016-05-09 09:23 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
2 |
2,624 |
by SergeyP Thu, 2016-05-05 02:07 |
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Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
2 |
3,277 |
by jrcf Tue, 2016-05-03 17:40 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
4 |
4,844 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
1 |
2,523 |
by rmoretti Thu, 2016-04-28 16:25 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
6 |
6,361 |
by rmoretti Thu, 2016-04-28 16:15 |
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Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,803 |
by rmoretti Thu, 2016-04-28 15:57 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
5 |
7,982 |
by rmoretti Thu, 2016-04-28 15:53 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
1 |
2,140 |
by rmoretti Thu, 2016-04-28 15:49 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
6 |
5,739 |
by rmoretti Thu, 2016-04-28 15:19 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
1 |
1,903 |
by rmoretti Thu, 2016-04-28 14:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
5 |
5,251 |
by banshee Tue, 2016-04-26 00:47 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,669 |
by saxen Mon, 2016-04-25 10:38 |
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Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2) by skovacs » Thu, 2012-05-10 20:10 |
18 |
17,488 |
by aaj Fri, 2016-04-22 15:20 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,398 |
by smlewis Thu, 2016-04-21 16:00 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
1 |
2,099 |
by rmoretti Fri, 2016-04-08 08:43 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,774 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
1 |
2,223 |
by yarovoy Wed, 2016-03-30 12:37 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
4,000 |
by smlewis Wed, 2016-03-30 09:52 |
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Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
4,416 |
by mgrom92 Wed, 2016-03-23 16:45 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
7,966 |
by jrcf Wed, 2016-03-23 12:16 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
2 |
2,829 |
by rmoretti Mon, 2016-03-14 07:58 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
1 |
2,005 |
by smlewis Sun, 2016-03-13 15:25 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
3 |
3,421 |
by rmoretti Mon, 2016-03-07 14:20 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
2 |
2,998 |
by aaj Mon, 2016-02-29 04:45 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
2 |
2,737 |
by aaj Mon, 2016-02-22 07:50 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,914 |
by aaj Mon, 2016-02-22 07:43 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
1 |
2,122 |
by rmoretti Sun, 2016-02-21 06:38 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,567 |
by aloshbau Sun, 2016-02-14 20:14 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,447 |
by jrcf Fri, 2016-02-12 16:41 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
1 |
1,903 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
7 |
6,867 |
by rmoretti Thu, 2016-02-04 09:29 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,788 |
by SergeyP Thu, 2016-02-04 00:07 |
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Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
1 |
2,440 |
by smlewis Sun, 2016-01-24 03:24 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
3,356 |
by smlewis Thu, 2016-01-14 08:19 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
1 |
2,491 |
by achambe Wed, 2016-01-13 10:46 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,900 |
by Lati Tue, 2016-01-12 13:28 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
1 |
2,012 |
by smlewis Sun, 2016-01-10 10:02 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
1 |
2,009 |
by smlewis Tue, 2015-12-22 08:31 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,916 |
by SergeyP Sun, 2015-12-20 01:44 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
2,654 |
by SergeyP Sat, 2015-12-19 05:20 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,465 |
by rosend Fri, 2015-12-18 19:39 |
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loop model error by albumns » Sun, 2011-04-03 00:26 |
21 |
20,249 |
by rmoretti Fri, 2015-12-18 14:26 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
3 |
3,905 |
by rmoretti Wed, 2015-12-16 11:22 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,519 |
by aloshbau Mon, 2015-12-14 23:30 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
1 |
3,353 |
by rmoretti Thu, 2015-12-03 15:14 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
2 |
2,697 |
by Al52 Tue, 2015-12-01 18:22 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,802 |
by road runner Tue, 2015-12-01 10:08 |
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RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
1 |
2,147 |
by Lati Fri, 2015-11-20 03:32 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
1 |
6,008 |
by rmoretti Tue, 2015-11-10 11:52 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
6,123 |
by syoifczeri Mon, 2015-11-02 03:59 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
7 |
7,944 |
by rmoretti Tue, 2015-10-27 09:11 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
1 |
2,021 |
by rmoretti Tue, 2015-10-27 08:46 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
2 |
3,873 |
by attesor Thu, 2015-10-22 03:42 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
2 |
3,854 |
by jrcf Fri, 2015-10-16 10:57 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
2 |
2,749 |
by gerdos Fri, 2015-10-16 03:01 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
5 |
6,706 |
by ssrb Tue, 2015-09-22 08:35 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,878 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
6,383 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,672 |
by cheyuk Sun, 2015-09-20 02:08 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
1 |
1,993 |
by rmoretti Sat, 2015-09-19 13:20 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
3 |
3,577 |
by rmoretti Thu, 2015-09-17 12:42 |
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