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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,417 by jarek
Mon, 2014-04-21 06:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
1,723 by MRH
Mon, 2014-04-21 06:48
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,212 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
1,978 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
3,503 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
2,448 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
3,399 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
2,181 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,215 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
2,167 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
4,048 by smlewis
Mon, 2014-04-21 06:48
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,136 by frits
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
4,276 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
2,640 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
2,565 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,463 by rosa
Mon, 2014-04-21 06:48
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
1,775 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
3,796 by rosa
Mon, 2014-04-21 06:48
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,299 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,330 by smlewis
Mon, 2014-04-21 06:48
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
3,464 by fukamitka
Mon, 2014-04-21 06:48
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
1,825 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
3,701 by MRH
Mon, 2014-04-21 06:48
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
6,335 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
1,563 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,145 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,245 by ytao
Mon, 2014-04-21 06:48
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,130 by smlewis
Mon, 2014-04-21 06:48
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
1,555 by frits
Mon, 2014-04-21 06:48
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,584 by banshee
Mon, 2014-04-21 06:48
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
16,775 by omirus
Mon, 2014-04-21 06:48
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,663 by berk
Mon, 2014-04-21 06:48
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
2,656 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,167 by rmoretti
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
4,699 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
2,136 by eunwook
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
7,203 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,876 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
5,491 by rmoretti
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
9,997 by pledor
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
5,773 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,220 by smlewis
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
8,709 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
2,181 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
1,767 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
10,022 by nawsad
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,446 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
3,521 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
3,263 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
1,673 by smlewis
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
5,616 by qlj
Mon, 2014-04-21 06:47
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
31,819 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,225 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
4,577 by ritacc18
Mon, 2014-04-21 06:47
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
4,650 by smlewis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
1,671 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,598 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,335 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
4,950 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
2,263 by tsjain
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
3,521 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
2,673 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,618 by ytao
Mon, 2014-04-21 06:47
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
2,103 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
7,108 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
2,484 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
12,018 by smlewis
Mon, 2014-04-21 06:47
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
1,985 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
1,852 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
1,782 by coxford
Mon, 2014-04-21 06:47
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
4,067 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
6,241 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
1,750 by msun
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
4,795 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
1,747 by doranhen
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
5,852 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
2,236 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,159 by doranhen
Mon, 2014-04-21 06:47
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55
13
6,784 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
7,637 by sabine
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
7,554 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
3,600 by doranhen
Mon, 2014-04-21 06:47
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
3,633 by tevang
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,902 by kalabharath
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,414 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,366 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
2,851 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,391 by xujc
Mon, 2014-04-21 06:47
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
4,185 by qlj
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
1,732 by smlewis
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
2,733 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
1,792 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
3,139 by rmoretti
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,886 by smlewis
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
3,222 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
4,206 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
1,383 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
1,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
2,292 by varma
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,865 by dave
Mon, 2014-04-21 06:47
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