You are here

Rosetta 3 - General

Topic / Topic starter Repliessort ascending Views Last post
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
1,826 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
1,574 by Run
Mon, 2014-04-21 06:48
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
1,835 by pledor
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,628 by barak
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
1,506 by doranhen
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
1,598 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
655 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
648 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
1,458 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
1,616 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
3,670 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,185 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
1,939 by doranhen
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
2,713 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
2,758 by phanvy
Thu, 2014-10-16 18:54
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
707 by sheehajh
Thu, 2018-02-08 21:18
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
1,845 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
3,095 by rmoretti
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
2,060 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
1,138 by rmoretti
Thu, 2018-06-28 14:09
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,474 by pachecoj
Tue, 2014-11-11 19:30
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,724 by dave
Mon, 2014-04-21 06:47
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
697 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
1,680 by molon
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
1,575 by justin
Mon, 2014-04-21 06:47
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
1,579 by jarod
Mon, 2014-04-21 06:47
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
2,470 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,542 by berk
Mon, 2014-04-21 06:48
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
1,593 by pitmand
Tue, 2015-05-26 12:20
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
378 by matteoferla
Wed, 2019-08-21 11:58
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
1,486 by swoody
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
1,565 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,798 by jwillis
Sat, 2015-06-27 21:11
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,638 by cossio
Wed, 2014-12-03 14:51
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
1,059 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,302 by gerdos
Fri, 2015-10-16 03:01
Normal topic Rosetta numbering with missing occupancies
by ShaneOConnor » Fri, 2011-10-07 16:18
2
2,306 by ShaneOConnor
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,356 by Lati
Tue, 2016-01-12 13:28
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
2,413 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
2,019 by Hanieh
Fri, 2014-02-28 12:43
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
2,430 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,777 by kalabharath
Mon, 2014-04-21 06:47
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
908 by htorres
Mon, 2018-02-05 06:53
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
2,462 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
1,954 by scombs
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
1,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
1,022 by vmulligan
Thu, 2017-04-27 16:41
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
833 by asbelx
Thu, 2018-04-26 00:23
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,343 by smlewis
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
1,183 by Karol
Thu, 2016-05-12 07:58
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
1,863 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,551 by smlewis
Thu, 2016-01-14 08:19
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
2,410 by ctaylor
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
1,848 by phanvy
Mon, 2014-04-21 03:58
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
1,101 by renedominik
Sat, 2018-07-07 03:03
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
31 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
2,251 by jos
Mon, 2014-04-21 06:47
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
187 by j.schmue
Tue, 2020-01-28 13:31
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
4,202 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,695 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
1,573 by exchhattu
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
2,830 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
2,261 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
1,464 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
1,736 by petrikigor
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
1,573 by aneamtu
Thu, 2018-01-18 00:56
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
1,614 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,386 by frichter
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
632 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
1,612 by lvtun
Mon, 2014-04-21 06:47
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
2,514 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
1,352 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,929 by jrcf
Fri, 2016-02-12 16:41
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
1,163 by sdh_h
Thu, 2016-08-04 11:22
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
7,448 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
2,399 by abiadak
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
1,456 by straore
Fri, 2015-04-17 01:54
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
1,499 by zwenthor
Mon, 2014-04-21 06:47
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
1,747 by jhbrown
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
1,352 by aaj
Mon, 2016-02-22 07:50
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
1,383 by exchhattu
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
1,624 by phanvy
Sun, 2014-06-22 23:29
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
1,549 by rmoretti
Tue, 2015-08-18 17:11
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
1,889 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
398 by mao_x
Thu, 2019-08-08 01:37
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
1,462 by jrcf
Tue, 2016-05-03 17:40
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
2,328 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,104 by jrcf
Fri, 2015-10-16 10:57
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
1,970 by vsjasion
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,277 by jarek
Mon, 2014-04-21 06:48
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,288 by road runner
Tue, 2015-12-01 10:08
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
1,556 by westleys
Mon, 2014-04-21 06:47
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,004 by gw
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
1,725 by Anatol
Mon, 2014-04-21 06:47
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
1,573 by jarod
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
2,991 by Apiwat
Sat, 2014-02-08 01:41
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,177 by aloshbau
Mon, 2015-12-14 23:30
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
667 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
1,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
1,367 by jhbrown
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General