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Rosetta 3 - General

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Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
873 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
1,433 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,107 by rmoretti
Fri, 2015-07-03 13:51
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
2,018 by smlewis
Mon, 2014-04-21 06:47
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
470 by vmulligan
Mon, 2019-04-08 14:49
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
4,086 by kwak
Mon, 2014-04-21 06:47
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
729 by matteoferla
Wed, 2019-11-20 02:32
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
865 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
891 by smlewis
Mon, 2018-11-19 13:20
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
2,103 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
3,462 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
2,665 by albumns
Mon, 2014-04-21 06:47
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
5,865 by monos_morpheus
Mon, 2014-04-21 06:47
Hot topic Is it possible to do alanine scanning in Rosetta 3.2.1.?
by monos_morpheus » Tue, 2011-04-12 02:36
21
13,324 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
9
4,828 by albumns
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
1,632 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,461 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
3,490 by krdav
Wed, 2016-08-17 12:57
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,387 by smlewis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
1,671 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
1,034 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
1,801 by rmoretti
Mon, 2014-04-21 06:47
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
430 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
301 by rmoretti
Wed, 2020-04-01 10:10
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
768 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,184 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
860 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
1,345 by rmoretti
Wed, 2018-11-21 14:11
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,618 by ytao
Mon, 2014-04-21 06:47
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
419 by ac.research
Fri, 2020-02-14 23:33
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,454 by SergeyP
Sat, 2015-12-19 05:20
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
0
482 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,118 by gw
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
4,951 by smlewis
Mon, 2014-04-21 06:47
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,388 by rmoretti
Thu, 2014-10-16 10:33
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
699 by matteoferla
Thu, 2018-09-13 06:21
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
6,401 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
476 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
473 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
1,353 by smlewis
Tue, 2017-04-18 08:33
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,463 by rosa
Mon, 2014-04-21 06:48
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,524 by frichter
Mon, 2014-04-21 06:47
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
191 by YuFei
Wed, 2020-04-22 17:27
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
8,036 by Basantab
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,350 by rmoretti
Fri, 2016-10-14 16:43
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
2,533 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
191 by matteoferla
Sat, 2020-06-20 03:56
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,262 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
405 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
2,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,276 by smlewis
Mon, 2014-04-21 06:47
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
2,922 by shadrinams
Mon, 2018-02-12 11:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
4,827 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
814 by rmoretti
Mon, 2017-03-06 08:37
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
2,292 by varma
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
2,575 by japgar
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,584 by banshee
Mon, 2014-04-21 06:48
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,285 by smlewis
Mon, 2014-04-21 06:47
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
11,642 by rmoretti
Fri, 2015-12-18 14:26
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,054 by rmoretti
Thu, 2015-08-06 09:28
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
2,501 by MRH
Mon, 2014-04-21 06:48
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
1,922 by ctaylor
Mon, 2014-04-21 06:47
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
4,018 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
1,883 by jklett
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
5,319 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
4,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
2,935 by rpache
Mon, 2014-04-21 06:47
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
189 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,663 by berk
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
3,701 by MRH
Mon, 2014-04-21 06:48
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,327 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
3,577 by jtmacd
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
3,963 by einew
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
6,208 by ablakely7
Wed, 2019-09-11 15:33
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
136 by jeanramos
Mon, 2020-07-13 00:56
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
1,692 by jarod
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
293 by yinasun
Fri, 2019-07-26 02:17
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
408 by rmoretti
Mon, 2019-08-26 15:00
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
456 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
562 by jalan
Sun, 2020-04-12 08:01
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
8,402 by Apiwat
Tue, 2014-03-11 09:42
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
2,238 by sumukh21
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
1,599 by ctaylor
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
643 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
2
1,779 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,380 by rmoretti
Tue, 2014-06-10 11:34
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
2,122 by jtmacd
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
3,139 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
3,463 by jurkm
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,132 by abdullah
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,413 by smlewis
Mon, 2014-04-21 06:47
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,301 by aloshbau
Sun, 2016-02-14 20:14
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,164 by rmoretti
Tue, 2014-07-01 12:07
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
3,633 by tevang
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
1,782 by coxford
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
9,997 by pledor
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
3,713 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
3,521 by arthuc01
Mon, 2014-04-21 06:47
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