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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,300 by smlewis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
1,554 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
932 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
1,657 by rmoretti
Mon, 2014-04-21 06:47
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
294 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
126 by rmoretti
Wed, 2020-04-01 10:10
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
632 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,106 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
780 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
1,124 by rmoretti
Wed, 2018-11-21 14:11
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
1,497 by ytao
Mon, 2014-04-21 06:47
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
206 by ac.research
Fri, 2020-02-14 23:33
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,319 by SergeyP
Sat, 2015-12-19 05:20
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
0
432 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,004 by gw
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
4,594 by smlewis
Mon, 2014-04-21 06:47
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,304 by rmoretti
Thu, 2014-10-16 10:33
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
587 by matteoferla
Thu, 2018-09-13 06:21
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
5,939 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
417 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
371 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
1,200 by smlewis
Tue, 2017-04-18 08:33
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,275 by rosa
Mon, 2014-04-21 06:48
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,386 by frichter
Mon, 2014-04-21 06:47
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
72 by YuFei
Wed, 2020-04-22 17:27
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
7,436 by Basantab
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,251 by rmoretti
Fri, 2016-10-14 16:43
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
2,352 by rmoretti
Mon, 2015-03-30 16:58
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,158 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
259 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
2,532 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,210 by smlewis
Mon, 2014-04-21 06:47
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
2,414 by shadrinams
Mon, 2018-02-12 11:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
4,454 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
718 by rmoretti
Mon, 2017-03-06 08:37
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
2,131 by varma
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
2,383 by japgar
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
1,458 by banshee
Mon, 2014-04-21 06:48
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,203 by smlewis
Mon, 2014-04-21 06:47
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
10,799 by rmoretti
Fri, 2015-12-18 14:26
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
960 by rmoretti
Thu, 2015-08-06 09:28
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
2,313 by MRH
Mon, 2014-04-21 06:48
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
2,428 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
1,753 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
3,721 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
1,710 by jklett
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
4,940 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
3,981 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
2,684 by rpache
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
1,542 by berk
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
3,469 by MRH
Mon, 2014-04-21 06:48
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,185 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
3,265 by jtmacd
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
3,734 by einew
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
4,961 by ablakely7
Wed, 2019-09-11 15:33
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
1,573 by jarod
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
218 by yinasun
Fri, 2019-07-26 02:17
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
294 by rmoretti
Mon, 2019-08-26 15:00
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
304 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
351 by jalan
Sun, 2020-04-12 08:01
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
7,748 by Apiwat
Tue, 2014-03-11 09:42
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
1,455 by ctaylor
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
2,062 by sumukh21
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
512 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
2
1,657 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,294 by rmoretti
Tue, 2014-06-10 11:34
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
1,931 by jtmacd
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
2,872 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
3,253 by jurkm
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,082 by abdullah
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,343 by smlewis
Mon, 2014-04-21 06:47
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,177 by aloshbau
Sun, 2016-02-14 20:14
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,074 by rmoretti
Tue, 2014-07-01 12:07
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
3,362 by tevang
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
1,699 by coxford
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
9,252 by pledor
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
3,461 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
3,341 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
2,344 by pardave
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
5,430 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
842 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,210 by yuvals
Mon, 2014-10-06 15:02
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
1,273 by smlewis
Sun, 2017-11-19 20:08
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
1,602 by lah435
Thu, 2015-02-12 09:16
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
31 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
421 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
2,747 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
1,057 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
1,601 by MRH
Mon, 2014-04-21 06:48
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
9,459 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
434 by vmulligan
Tue, 2019-03-26 11:30
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,050 by smlewis
Mon, 2014-04-21 06:48
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
3,910 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,398 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,092 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,784 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,102 by frichter
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
6,208 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
2,698 by jarod
Mon, 2014-04-21 06:47
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