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Replies |
Views | Last post | |
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JD3 w/ Silent file output crashing - Option filename not found by aduffy33 » Mon, 2023-10-30 13:40 |
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400 |
by aduffy33 Mon, 2023-10-30 15:35 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
2 |
3,351 |
by vsjasion Mon, 2014-04-21 06:47 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,766 |
by jarek Mon, 2014-04-21 06:48 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,801 |
by road runner Tue, 2015-12-01 10:08 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,930 |
by mansi Mon, 2014-04-21 06:47 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
2 |
3,274 |
by gw Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
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3,111 |
by Anatol Mon, 2014-04-21 06:47 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
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2,883 |
by jtmacd Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
2 |
6,198 |
by Apiwat Sat, 2014-02-08 01:41 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
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3,228 |
by pledor Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
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2,532 |
by jhbrown Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,540 |
by inder Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
5,332 |
by Ashafix Wed, 2014-02-19 06:53 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
4,278 |
by rmoretti Wed, 2015-01-21 10:05 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
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2,294 |
by MA Thu, 2017-04-27 18:53 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
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2,518 |
by aloshbau Mon, 2015-12-14 23:30 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,897 |
by jalan Thu, 2020-04-23 05:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
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1,421 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
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963 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
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830 |
by varunmc99 Fri, 2023-05-12 11:49 |
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Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
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4,289 |
by ctaylor Mon, 2014-04-21 06:47 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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4,511 |
by knutjbj Mon, 2014-04-21 06:47 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
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4,084 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
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2,466 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
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3,246 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
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3,000 |
by rmoretti Thu, 2015-08-06 09:21 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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4,047 |
by jcsaborio Mon, 2014-04-21 06:47 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
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2,782 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
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2,954 |
by Apiwat Thu, 2014-04-17 09:56 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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3,834 |
by Awagner7 Tue, 2020-04-28 10:51 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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2,845 |
by barak Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
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3,130 |
by alejandro Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
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3,225 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
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2,567 |
by aloshbau Sun, 2016-02-14 20:14 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
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1,526 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
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3,096 |
by exchhattu Mon, 2014-04-21 06:47 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,805 |
by kbuhr Tue, 2015-07-14 04:30 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
2 |
2,699 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,997 |
by smlewis Mon, 2014-04-21 06:47 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
3,049 |
by MRH Mon, 2014-04-21 06:48 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,839 |
by j.schmue Tue, 2020-01-28 13:31 |
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Cluster Error by justin » Mon, 2010-04-26 00:06 |
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2,946 |
by justin Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
2 |
3,066 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
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4,057 |
by JuliusSu Fri, 2014-08-08 02:07 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
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2,927 |
by jarod Mon, 2014-04-21 06:47 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
2 |
2,903 |
by frichter Mon, 2014-04-21 06:47 |
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Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
3,039 |
by zdn3023 Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
4,139 |
by rmoretti Tue, 2016-07-12 08:18 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,854 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
3,273 |
by phanvy Wed, 2014-12-10 00:17 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
2 |
2,829 |
by rmoretti Mon, 2016-03-14 07:58 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
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2,396 |
by ac.research Fri, 2017-03-31 07:36 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
2 |
1,073 |
by almeida85 Thu, 2022-08-11 00:32 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
3,018 |
by Lindsay Mon, 2014-04-21 06:47 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
2 |
2,695 |
by Al52 Tue, 2015-12-01 18:22 |
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RNA update library by Anne Klein » Mon, 2022-05-16 16:04 |
2 |
1,069 |
by Anne Klein Tue, 2022-05-24 21:38 |
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question about scoring silent output files and their contents by burkheadlab » Wed, 2011-07-27 16:28 |
2 |
3,330 |
by rmoretti Mon, 2014-04-21 06:47 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
2 |
3,011 |
by aroop Mon, 2014-04-21 06:47 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,835 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
2 |
1,308 |
by lanselibai Wed, 2021-06-23 13:21 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
2 |
2,889 |
by qlj Thu, 2014-03-06 22:20 |
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metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
2 |
3,011 |
by lah435 Thu, 2015-02-12 09:16 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,819 |
by exchhattu Mon, 2014-04-21 06:47 |
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Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
3,008 |
by doranhen Mon, 2014-04-21 06:47 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
3,051 |
by jtmacd Mon, 2014-04-21 06:48 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
2 |
3,712 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'? by JW_24 » Tue, 2023-01-24 04:40 |
2 |
819 |
by JW_24 Tue, 2023-01-24 14:52 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
2 |
3,056 |
by attesor Fri, 2014-10-31 04:23 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
2 |
4,016 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
2 |
979 |
by csvajda Thu, 2022-06-30 16:26 |
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Error when using published constraints file by Delfosse57 » Thu, 2023-08-17 11:22 |
2 |
531 |
by ikalvet Mon, 2023-08-21 05:52 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
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3,166 |
by khanhbinh Mon, 2014-04-21 06:47 |
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Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
2 |
4,381 |
by rmoretti Tue, 2015-09-08 10:18 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
2 |
954 |
by Zehui Zhou Wed, 2023-02-15 05:40 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
4,124 |
by ltrabuco Mon, 2014-04-21 06:47 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
2 |
1,133 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
2,420 |
by mao_x Thu, 2019-08-08 01:37 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
2 |
1,765 |
by rohi Tue, 2020-10-13 09:15 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
2 |
3,259 |
by zhisheng Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
2 |
2,998 |
by aaj Mon, 2016-02-29 04:45 |
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Renumbering PDB by jgustat » Wed, 2022-07-27 13:37 |
2 |
990 |
by jgustat Thu, 2022-07-28 10:00 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,532 |
by smlewis Mon, 2014-04-21 06:47 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
2 |
2,019 |
by matteoferla Thu, 2021-10-07 09:31 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
2 |
3,067 |
by Lindsay Mon, 2014-04-21 06:47 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
3,501 |
by ytao Mon, 2014-04-21 06:48 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
2 |
3,512 |
by rmoretti Tue, 2014-06-03 11:45 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
2 |
3,870 |
by attesor Thu, 2015-10-22 03:42 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
3,076 |
by felipet Sat, 2016-07-09 09:50 |
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Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
2 |
4,394 |
by Victor Fri, 2014-01-31 10:41 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
2 |
2,624 |
by SergeyP Thu, 2016-05-05 02:07 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
2 |
2,742 |
by rmoretti Mon, 2014-04-21 06:47 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
2 |
2,805 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
2 |
2,776 |
by rmoretti Fri, 2015-01-09 10:59 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
2,453 |
by sgaray Fri, 2021-06-25 11:26 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,900 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
2 |
2,504 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
2 |
1,127 |
by asbelx Mon, 2022-06-06 23:15 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
2 |
661 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,978 |
by ctaylor Mon, 2014-04-21 06:47 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
2,408 |
by eminegenetics Wed, 2018-07-18 13:48 |
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