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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort descending
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
4,595 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,187 by rmoretti
Tue, 2014-11-04 10:35
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,249 by smlewis
Fri, 2014-11-07 12:03
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,165 by rmoretti
Tue, 2014-11-11 13:22
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
9,627 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,505 by pachecoj
Tue, 2014-11-11 19:30
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
871 by lanselibai
Sun, 2014-11-16 10:44
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
2,772 by rmoretti
Tue, 2014-11-18 10:01
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
6,053 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,696 by cossio
Wed, 2014-12-03 14:51
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,986 by rmoretti
Wed, 2014-12-03 18:52
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
2,664 by cossio
Thu, 2014-12-04 05:41
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
1,654 by phanvy
Wed, 2014-12-10 00:17
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
3,637 by lanselibai
Fri, 2014-12-12 10:27
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,350 by rmoretti
Mon, 2014-12-15 02:37
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
838 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
3,257 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
2,451 by lanselibai
Tue, 2014-12-16 10:48
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
3,897 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,858 by smlewis
Tue, 2014-12-23 13:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
2,415 by zaldini
Fri, 2015-01-02 05:38
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
2,585 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
2,537 by zaldini
Wed, 2015-01-07 20:35
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,448 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
4,887 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
2,556 by rmoretti
Wed, 2015-01-21 10:05
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
3,209 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
3,489 by cossio
Thu, 2015-01-29 11:50
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
2,350 by jwillis
Sat, 2015-02-07 20:40
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
6,247 by rmoretti
Mon, 2015-02-09 09:09
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
2,248 by rmoretti
Mon, 2015-02-09 11:21
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
7,241 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
3,773 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
8,225 by lanselibai
Tue, 2015-02-10 14:03
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
1,626 by lah435
Thu, 2015-02-12 09:16
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,178 by rmoretti
Wed, 2015-02-18 09:17
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,162 by rmoretti
Wed, 2015-02-18 09:19
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
14,324 by rmoretti
Wed, 2015-02-18 09:23
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,367 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
2,759 by rmoretti
Mon, 2015-03-30 14:43
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,024 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
2,391 by rmoretti
Mon, 2015-03-30 16:58
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,447 by rmoretti
Thu, 2015-04-02 12:52
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
3,381 by rmoretti
Thu, 2015-04-16 10:09
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
1,486 by straore
Fri, 2015-04-17 01:54
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
7,069 by rmoretti
Fri, 2015-04-24 12:15
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
3,098 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,051 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
2,156 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
6,721 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
2,805 by rmoretti
Tue, 2015-05-05 14:31
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,676 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,086 by rmoretti
Mon, 2015-05-25 11:07
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
1,620 by pitmand
Tue, 2015-05-26 12:20
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
5,009 by rmoretti
Mon, 2015-06-01 15:27
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,129 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
3,842 by jwillis
Sat, 2015-06-27 21:11
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
1,394 by rmoretti
Fri, 2015-07-03 12:58
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,291 by rmoretti
Fri, 2015-07-03 13:04
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,090 by rmoretti
Fri, 2015-07-03 13:14
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,846 by rmoretti
Fri, 2015-07-03 13:24
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
34,594 by rmoretti
Fri, 2015-07-03 13:29
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,039 by rmoretti
Fri, 2015-07-03 13:51
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
4,706 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
1,392 by MarkW
Fri, 2015-07-03 15:36
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
1,898 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
3,932 by kbuhr
Tue, 2015-07-14 04:30
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
1,421 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
1,507 by rmoretti
Thu, 2015-08-06 09:21
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
981 by rmoretti
Thu, 2015-08-06 09:28
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
1,594 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
3,066 by Sandy
Fri, 2015-08-07 15:49
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
2,400 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
1,581 by rmoretti
Tue, 2015-08-18 17:11
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,094 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,423 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
2,284 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
1,934 by rmoretti
Thu, 2015-09-17 12:42
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
970 by rmoretti
Sat, 2015-09-19 13:20
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
2,407 by cheyuk
Sun, 2015-09-20 02:08
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
4,245 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
1,387 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
3,803 by ssrb
Tue, 2015-09-22 08:35
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,332 by gerdos
Fri, 2015-10-16 03:01
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,143 by jrcf
Fri, 2015-10-16 10:57
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
1,939 by attesor
Thu, 2015-10-22 03:42
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
999 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
4,303 by rmoretti
Tue, 2015-10-27 09:11
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
3,731 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
3,148 by rmoretti
Tue, 2015-11-10 11:52
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,175 by Lati
Fri, 2015-11-20 03:32
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
4
2,311 by tylerborrman
Tue, 2015-11-24 13:52
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,323 by road runner
Tue, 2015-12-01 10:08
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,277 by Al52
Tue, 2015-12-01 18:22
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,789 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,203 by aloshbau
Mon, 2015-12-14 23:30
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
1,970 by rmoretti
Wed, 2015-12-16 11:22
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
10,998 by rmoretti
Fri, 2015-12-18 14:26
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
3,411 by rosend
Fri, 2015-12-18 19:39
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,349 by SergeyP
Sat, 2015-12-19 05:20
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