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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,277 by yuvals
Mon, 2014-10-06 15:02
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
1,410 by smlewis
Sun, 2017-11-19 20:08
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
1,688 by lah435
Thu, 2015-02-12 09:16
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
227 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
469 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
2,907 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
1,191 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
1,696 by MRH
Mon, 2014-04-21 06:48
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
9,963 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
516 by vmulligan
Tue, 2019-03-26 11:30
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,108 by smlewis
Mon, 2014-04-21 06:48
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
4,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,483 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,866 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,164 by frichter
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
6,589 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
2,937 by jarod
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
6,586 by jurkm
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
2,504 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08
19
13,380 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
2,015 by matteoferla
Sat, 2017-08-05 07:18
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
4,879 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
701 by jkleman
Sat, 2018-04-14 10:55
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
1,851 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
1,557 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
2,021 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
1,260 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
551 by jferrie
Mon, 2018-04-23 15:25
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
280 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,479 by rmoretti
Sat, 2015-09-05 12:10
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
285 by jkleman
Thu, 2020-01-16 11:05
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39
25
14,743 by Gaurav_kumar
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
4,241 by yuvals
Sat, 2014-06-21 02:17
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
6,478 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
621 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
1
119 by smlewis
Fri, 2020-09-04 11:25
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
2,388 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
474 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
1,914 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
2,436 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,266 by smlewis
Mon, 2014-04-21 06:47
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
896 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
1,965 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
2,101 by smlewis
Thu, 2016-04-21 16:00
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
432 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,380 by jarek
Mon, 2014-04-21 06:48
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
395 by smlewis
Fri, 2019-06-28 13:56
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
3,259 by rmoretti
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,347 by rmoretti
Fri, 2015-07-03 13:04
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
2,459 by franfdez
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,518 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,157 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,232 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
924 by rmoretti
Thu, 2016-09-08 07:56
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,152 by smlewis
Mon, 2014-04-21 06:47
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
10,185 by smlewis
Tue, 2016-06-28 09:05
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,383 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
913 by rmoretti
Tue, 2016-07-12 08:40
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
1,714 by smlewis
Thu, 2016-01-14 08:19
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
3,735 by robren
Mon, 2014-04-21 06:47
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
1,532 by rmoretti
Mon, 2014-06-16 08:23
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
2,042 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,042 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,409 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
2,346 by Victor
Fri, 2014-01-31 10:41
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
719 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
7,459 by dgront
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,334 by fred
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
1,423 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
2,019 by scombs
Mon, 2014-04-21 06:47
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
1,939 by smlewis
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,277 by rmoretti
Mon, 2014-04-21 06:48
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
3,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,010 by rmoretti
Mon, 2017-05-15 09:03
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
157 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,126 by rmoretti
Mon, 2015-05-25 11:07
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
2,819 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
4,230 by rmoretti
Mon, 2014-04-21 06:48
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
1,575 by smlewis
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19
22
10,260 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
1,808 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
2,253 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,069 by nawsad
Fri, 2014-06-20 03:00
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
2,196 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
1,477 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,261 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
1,213 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
535 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,102 by rmoretti
Mon, 2016-11-14 15:12
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
161 by matteoferla
Tue, 2020-06-23 10:58
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
2,579 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,420 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
4,537 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
2,540 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,322 by smlewis
Mon, 2014-04-21 06:47
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
2,493 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
1,571 by rmoretti
Thu, 2015-08-06 09:21
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
410 by smlewis
Wed, 2019-12-04 13:07
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