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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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2,213 |
by smlewis Mon, 2014-04-21 06:47 |
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Linker problems when building mini by assaff » Mon, 2009-10-12 01:07 |
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5,597 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,538 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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2,217 |
by rmoretti Wed, 2015-02-18 09:17 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,394 |
by matteoferla Sat, 2020-06-20 03:56 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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4,270 |
by rmoretti Mon, 2015-03-30 16:58 |
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Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
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2,385 |
by rmoretti Fri, 2016-10-14 16:43 |
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Ligand Docking Positive Control: wt ligand by Basantab » Thu, 2011-10-27 13:36 |
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14,091 |
by Basantab Mon, 2014-04-21 06:47 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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956 |
by YuFei Wed, 2020-04-22 17:27 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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1,335 |
by hong wei Thu, 2021-11-25 02:46 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
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2,900 |
by frichter Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
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5,407 |
by rosa Mon, 2014-04-21 06:48 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
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1,695 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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3,767 |
by smlewis Tue, 2017-04-18 08:33 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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2,282 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,342 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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10,861 |
by jadolfbr Wed, 2014-11-26 11:40 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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1,823 |
by matteoferla Thu, 2018-09-13 06:21 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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2,394 |
by rmoretti Thu, 2014-10-16 10:33 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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8,385 |
by smlewis Mon, 2014-04-21 06:47 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
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3,274 |
by gw Mon, 2014-04-21 06:47 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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1,141 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,649 |
by SergeyP Sat, 2015-12-19 05:20 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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2,057 |
by ac.research Fri, 2020-02-14 23:33 |
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JD3 w/ Silent file output crashing - Option filename not found by aduffy33 » Mon, 2023-10-30 13:40 |
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399 |
by aduffy33 Mon, 2023-10-30 15:35 |
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JD3 FastRelax over MPI - crashes on relax completion/before writing output by aduffy33 » Tue, 2024-03-12 12:51 |
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141 |
by aduffy33 Tue, 2024-03-12 12:52 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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2,761 |
by ytao Mon, 2014-04-21 06:47 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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1,085 |
by rmoretti Fri, 2022-02-18 11:14 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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3,576 |
by rmoretti Wed, 2018-11-21 14:11 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,815 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
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1,759 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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2,159 |
by rmoretti Wed, 2015-06-17 12:43 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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2,076 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,451 |
by rmoretti Wed, 2020-04-01 10:10 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,579 |
by rmoretti Mon, 2019-07-08 08:05 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,922 |
by rmoretti Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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2,103 |
by rmoretti Fri, 2017-04-21 07:52 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,854 |
by rmoretti Mon, 2014-04-21 06:47 |
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is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
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2,200 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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6,553 |
by krdav Wed, 2016-08-17 12:57 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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2,532 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,426 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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8,335 |
by albumns Mon, 2014-04-21 06:47 |
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Is it possible to do alanine scanning in Rosetta 3.2.1.? by monos_morpheus » Tue, 2011-04-12 02:36 |
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21,815 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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9,570 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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4,999 |
by albumns Mon, 2014-04-21 06:47 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
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5,349 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,616 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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2,602 |
by smlewis Mon, 2018-11-19 13:20 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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2,362 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,643 |
by matteoferla Wed, 2019-11-20 02:32 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
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6,438 |
by kwak Mon, 2014-04-21 06:47 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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1,579 |
by vmulligan Mon, 2019-04-08 14:49 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,572 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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2,010 |
by rmoretti Fri, 2015-07-03 13:51 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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1,277 |
by rmoretti Wed, 2021-06-23 02:17 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,738 |
by exchhattu Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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3,205 |
by jadolfbr Wed, 2019-06-12 20:17 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
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8,636 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
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2,825 |
by rmoretti Mon, 2016-03-14 07:58 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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492 |
by NingNing Tue, 2022-08-09 17:36 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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7,857 |
by mahajanr Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
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6,188 |
by Apiwat Sat, 2014-02-08 01:41 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,219 |
by jackzzs Mon, 2023-05-15 03:17 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,558 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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3,443 |
by ctaylor Mon, 2014-04-21 06:47 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
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2,825 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
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2,016 |
by smlewis Mon, 2014-04-21 06:47 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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9,094 |
by attesor Fri, 2014-10-31 04:49 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
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2,668 |
by biofisikx Mon, 2014-04-21 06:47 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,872 |
by smlewis Mon, 2014-04-21 06:47 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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2,363 |
by CameronJA Wed, 2022-01-19 20:50 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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5,238 |
by banshee Tue, 2016-04-26 00:47 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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893 |
by vmulligan Thu, 2022-03-03 18:48 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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1,221 |
by ela Fri, 2018-08-31 02:53 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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5,248 |
by rmoretti Tue, 2014-11-18 10:01 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,684 |
by smlewis Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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2,172 |
by smlewis Mon, 2014-04-21 06:47 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,717 |
by rmoretti Mon, 2018-02-12 09:39 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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2,009 |
by smlewis Sun, 2016-01-10 10:02 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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11,200 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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4,281 |
by jadolfbr Thu, 2020-09-24 10:04 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,655 |
by matteoferla Mon, 2021-03-22 08:29 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,810 |
by jadolfbr Sun, 2020-05-03 19:38 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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906 |
by matteoferla Wed, 2020-07-22 03:08 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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5,319 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,711 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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2,397 |
by smlewis Mon, 2014-04-21 06:47 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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2,102 |
by ylwang Tue, 2020-03-24 19:35 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,988 |
by matteoferla Sat, 2020-03-21 09:14 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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3,113 |
by wangyr Mon, 2014-04-21 06:47 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,909 |
by rmoretti Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
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2,994 |
by aaj Mon, 2016-02-29 04:45 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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9,208 |
by Lindsay Mon, 2014-04-21 06:47 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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2,465 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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1,090 |
by BioPython Sun, 2019-05-12 20:07 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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3,280 |
by msun Mon, 2014-04-21 06:47 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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4,173 |
by vanita Mon, 2014-04-21 06:47 |
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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2,301 |
by libai2098 Mon, 2014-04-21 06:47 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
2 |
3,483 |
by vanita Mon, 2014-04-21 06:47 |
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