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Rosetta 3 - General

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Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
1,972 by doranhen
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
1,974 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,975 by jrcf
Fri, 2016-02-12 16:41
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
1,976 by smlewis
Thu, 2016-04-21 16:00
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
1,980 by scombs
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,986 by rmoretti
Wed, 2014-12-03 18:52
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
1,988 by zhisheng
Mon, 2014-04-21 06:47
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
1,991 by smlewis
Fri, 2016-07-22 07:31
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
1,992 by einew
Mon, 2014-04-21 06:47
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
1,999 by rmoretti
Mon, 2014-04-21 06:47
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
1,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
2,001 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
2,004 by eunwook
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
2,006 by smlewis
Mon, 2014-04-21 06:47
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
2,006 by zharmad
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
2,007 by vanita
Mon, 2014-04-21 06:47
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,007 by frits
Mon, 2014-04-21 06:48
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,007 by vsjasion
Mon, 2014-04-21 06:47
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
2,014 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
2,014 by smlewis
Mon, 2014-04-21 06:47
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,019 by rmoretti
Tue, 2014-06-03 11:45
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
2,030 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
2,031 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,034 by gw
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,041 by doranhen
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
2,044 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
2,046 by zlni
Mon, 2014-04-21 06:47
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
2,047 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,063 by smlewis
Mon, 2014-04-21 06:47
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
2,064 by rmoretti
Thu, 2017-08-03 09:01
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
2,066 by msardejani
Sun, 2016-08-07 17:49
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
2,068 by linucks
Wed, 2018-04-25 08:50
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,068 by reddybg
Mon, 2014-04-21 06:47
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
2,068 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
2,069 by Hanieh
Fri, 2014-02-28 12:43
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,069 by IAndre
Mon, 2014-04-21 06:47
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
2,069 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
2,082 by rmoretti
Mon, 2014-04-21 06:48
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
2,090 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,093 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
2,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
3
2,102 by sk0319
Thu, 2017-01-05 17:07
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,103 by rmoretti
Mon, 2014-04-21 06:48
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,104 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
2,110 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
2,115 by smlewis
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
2,118 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
2,121 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,122 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
2,127 by tsjain
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,136 by ytao
Mon, 2014-04-21 06:48
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,143 by jrcf
Fri, 2015-10-16 10:57
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
2,143 by smlewis
Mon, 2014-04-21 06:47
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
2,147 by szypanther
Mon, 2014-05-26 22:03
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
2,155 by einew
Mon, 2014-04-21 06:47
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
2,156 by rmoretti
Thu, 2015-04-30 16:09
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,168 by smlewis
Mon, 2014-04-21 06:47
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
2,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,175 by rmoretti
Mon, 2014-04-21 06:47
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
5
2,176 by BioPython
Fri, 2019-07-12 03:15
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
2,182 by varma
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
2,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
2,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
2,194 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52
3
2,199 by IAndre
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,206 by smlewis
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,207 by alejandro
Mon, 2014-04-21 06:47
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
2,209 by alejandro
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
2,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
2,220 by franfdez
Mon, 2014-04-21 06:47
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,225 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
2,226 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,228 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
2,235 by Victor
Fri, 2014-01-31 10:41
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
2,241 by rmoretti
Tue, 2014-04-01 08:12
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
2,244 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
2,248 by rmoretti
Mon, 2015-02-09 11:21
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
2,250 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
2,251 by Matthys
Mon, 2014-04-21 06:47
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
2,253 by cannond
Wed, 2017-03-08 03:00
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
2,275 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
2,277 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
2,282 by jos
Mon, 2014-04-21 06:47
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
2,284 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
2,284 by rmoretti
Tue, 2015-09-08 10:18
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
2,288 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
2,292 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
2,294 by inder
Mon, 2014-04-21 06:47
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
2,295 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
2,299 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
2,304 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,304 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,308 by jarek
Mon, 2014-04-21 06:48
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
4
2,311 by tylerborrman
Tue, 2015-11-24 13:52
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
2,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
2,317 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
2,318 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
2,323 by saxen
Mon, 2016-04-25 10:38
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