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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,878 |
by aaj Mon, 2016-02-22 07:43 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,867 |
by rmoretti Mon, 2014-04-21 06:47 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
2 |
2,867 |
by frichter Mon, 2014-04-21 06:47 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,865 |
by Lati Tue, 2016-01-12 13:28 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,862 |
by Lindsay Mon, 2014-04-21 06:47 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
2 |
2,858 |
by jtmacd Mon, 2014-04-21 06:47 |
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Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
2 |
2,857 |
by monteirotorres Mon, 2014-04-21 06:47 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
2 |
2,852 |
by pachecoj Tue, 2014-11-11 19:30 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
2 |
2,849 |
by qlj Thu, 2014-03-06 22:20 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
2,849 |
by ylwang Wed, 2018-11-14 03:03 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
1 |
2,847 |
by smlewis Mon, 2014-04-21 06:47 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,846 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,846 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,840 |
by berk Mon, 2014-04-21 06:48 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
4 |
2,839 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,834 |
by jadolfbr Sun, 2016-12-11 10:53 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,832 |
by kaue Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,830 |
by rmoretti Mon, 2014-04-21 06:47 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,829 |
by straore Fri, 2015-04-17 01:54 |
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make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
2 |
2,828 |
by jarod Mon, 2014-04-21 06:47 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
2 |
2,822 |
by barak Mon, 2014-04-21 06:47 |
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weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,817 |
by louisclark Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,810 |
by doranhen Mon, 2014-04-21 06:47 |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
1 |
2,806 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,804 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
3 |
2,799 |
by rmoretti Thu, 2017-08-03 08:50 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
2 |
2,797 |
by rmoretti Mon, 2016-03-14 07:58 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
1 |
2,796 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta lack of necessary application by ylwang » Wed, 2018-11-07 01:13 |
3 |
2,795 |
by rmoretti Wed, 2018-11-21 13:50 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
2 |
2,791 |
by smlewis Mon, 2014-04-21 06:47 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,785 |
by exchhattu Mon, 2014-04-21 06:47 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
1 |
2,785 |
by smlewis Mon, 2014-04-21 06:47 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
3 |
2,782 |
by rmoretti Mon, 2017-10-30 12:02 |
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
3 |
2,779 |
by smlewis Wed, 2018-04-18 19:03 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
0 |
2,779 |
by jadolfbr Mon, 2014-04-21 06:47 |
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RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
1 |
2,777 |
by smlewis Mon, 2014-04-21 06:47 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
2 |
2,775 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,768 |
by road runner Tue, 2015-12-01 10:08 |
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possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
2 |
2,766 |
by jtmacd Mon, 2014-04-21 06:47 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
1 |
2,766 |
by rmoretti Fri, 2015-07-03 12:58 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
5 |
2,761 |
by everyday847 Mon, 2021-03-29 20:19 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,759 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,757 |
by smlewis Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,754 |
by banshee Mon, 2014-04-21 06:48 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
4 |
2,753 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
2,747 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
2 |
2,744 |
by rmoretti Fri, 2015-01-09 10:59 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,742 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,741 |
by ytao Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,734 |
by smlewis Mon, 2014-04-21 06:47 |
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error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
1 |
2,724 |
by jtmacd Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
1 |
2,723 |
by smlewis Mon, 2014-04-21 06:47 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
2 |
2,722 |
by htorres Mon, 2018-02-05 06:53 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
2 |
2,718 |
by gerdos Fri, 2015-10-16 03:01 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
2 |
2,710 |
by exchhattu Mon, 2014-04-21 06:47 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
2 |
2,708 |
by pachecoj Wed, 2014-10-15 15:12 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
2 |
2,707 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
2,707 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,703 |
by smlewis Sun, 2017-01-15 18:10 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
2 |
2,703 |
by aaj Mon, 2016-02-22 07:50 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
1 |
2,697 |
by rmoretti Tue, 2015-07-14 15:27 |
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3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
1 |
2,696 |
by smlewis Mon, 2014-04-21 06:47 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
2,693 |
by MarkW Fri, 2015-07-03 15:36 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
2,682 |
by SergeyP Fri, 2017-03-10 11:16 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
1 |
2,682 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
1 |
2,681 |
by rmoretti Fri, 2017-04-14 08:37 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,679 |
by smlewis Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,678 |
by smlewis Mon, 2014-04-21 06:47 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
6 |
2,674 |
by rmoretti Thu, 2021-06-24 12:23 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
2,674 |
by gipsonb Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
1 |
2,674 |
by smlewis Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
2 |
2,673 |
by smlewis Mon, 2014-04-21 06:47 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
2,672 |
by rmoretti Fri, 2018-08-03 08:42 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
2 |
2,664 |
by Al52 Tue, 2015-12-01 18:22 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
2,659 |
by mpacella Mon, 2014-04-21 06:47 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,651 |
by mmarlett Thu, 2016-06-16 07:06 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
2 |
2,646 |
by rmoretti Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
1 |
2,645 |
by smlewis Mon, 2014-04-21 06:47 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
2,643 |
by biofisikx Mon, 2014-04-21 06:47 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
2 |
2,628 |
by Karol Thu, 2016-05-12 07:58 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
3 |
2,625 |
by smlewis Wed, 2018-04-04 10:42 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,623 |
by rmoretti Mon, 2014-06-16 08:23 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
1 |
2,619 |
by smlewis Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
2,617 |
by SergeyP Sat, 2015-12-19 05:20 |
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Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
1 |
2,616 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
2,616 |
by vmulligan Thu, 2017-04-27 16:41 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,605 |
by rmoretti Mon, 2014-04-21 06:47 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,597 |
by smlewis Mon, 2014-04-21 06:47 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
2 |
2,593 |
by SergeyP Thu, 2016-05-05 02:07 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
2,588 |
by msardejani Wed, 2016-10-05 10:53 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
2,582 |
by ndousis Mon, 2014-04-21 06:47 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
1 |
2,582 |
by smlewis Mon, 2014-04-21 06:47 |
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Can rosetta model cyclic peptide? by Apiwat » Fri, 2014-02-07 02:08 |
1 |
2,581 |
by rmoretti Tue, 2014-02-11 06:24 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
2,578 |
by smlewis Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
1 |
2,575 |
by rmoretti Mon, 2014-04-21 06:48 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
1 |
2,569 |
by rmoretti Wed, 2014-07-16 08:07 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,567 |
by smlewis Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,565 |
by coxford Mon, 2014-04-21 06:47 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,559 |
by rmoretti Mon, 2014-04-21 06:47 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
2 |
2,558 |
by brspurri Thu, 2020-08-20 13:22 |
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