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Rosetta 3 - General

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Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,878 by aaj
Mon, 2016-02-22 07:43
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,867 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,867 by frichter
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,865 by Lati
Tue, 2016-01-12 13:28
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,862 by Lindsay
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,858 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,857 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,852 by pachecoj
Tue, 2014-11-11 19:30
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,849 by qlj
Thu, 2014-03-06 22:20
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
2,849 by ylwang
Wed, 2018-11-14 03:03
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,847 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,846 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
2,846 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,840 by berk
Mon, 2014-04-21 06:48
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
2,839 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,834 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,832 by kaue
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
2,830 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,829 by straore
Fri, 2015-04-17 01:54
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,828 by jarod
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,822 by barak
Mon, 2014-04-21 06:47
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,817 by louisclark
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,810 by doranhen
Mon, 2014-04-21 06:47
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
2,806 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,804 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,799 by rmoretti
Thu, 2017-08-03 08:50
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,797 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,796 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
2,795 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,791 by smlewis
Mon, 2014-04-21 06:47
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,785 by exchhattu
Mon, 2014-04-21 06:47
Normal topic how same random seeds can be used in rosetta for mpi run.
by exchhattu » Wed, 2009-10-28 22:09
1
2,785 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
2,782 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
2,779 by smlewis
Wed, 2018-04-18 19:03
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,779 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,775 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,768 by road runner
Tue, 2015-12-01 10:08
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,766 by jtmacd
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,766 by rmoretti
Fri, 2015-07-03 12:58
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
2,761 by everyday847
Mon, 2021-03-29 20:19
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,757 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,754 by banshee
Mon, 2014-04-21 06:48
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,753 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
2,747 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,744 by rmoretti
Fri, 2015-01-09 10:59
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,742 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,741 by ytao
Mon, 2014-04-21 06:47
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,734 by smlewis
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,724 by jtmacd
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,723 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
2,722 by htorres
Mon, 2018-02-05 06:53
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,718 by gerdos
Fri, 2015-10-16 03:01
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,710 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,708 by pachecoj
Wed, 2014-10-15 15:12
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,707 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
2,707 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,703 by smlewis
Sun, 2017-01-15 18:10
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,703 by aaj
Mon, 2016-02-22 07:50
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,697 by rmoretti
Tue, 2015-07-14 15:27
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,693 by MarkW
Fri, 2015-07-03 15:36
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,682 by SergeyP
Fri, 2017-03-10 11:16
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,682 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
2,681 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic Add a ligand with only one atom (i.e. Zn) to the RosettaCM
by lanselibai » Tue, 2021-06-22 10:28
6
2,674 by rmoretti
Thu, 2021-06-24 12:23
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,674 by gipsonb
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,674 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
2,673 by smlewis
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
2,672 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
2,664 by Al52
Tue, 2015-12-01 18:22
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,659 by mpacella
Mon, 2014-04-21 06:47
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,651 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,646 by rmoretti
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,645 by smlewis
Mon, 2014-04-21 06:47
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
2,643 by biofisikx
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
2,628 by Karol
Thu, 2016-05-12 07:58
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
2,625 by smlewis
Wed, 2018-04-04 10:42
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,623 by rmoretti
Mon, 2014-06-16 08:23
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,619 by smlewis
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
2,617 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,616 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
2,616 by vmulligan
Thu, 2017-04-27 16:41
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,605 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,597 by smlewis
Mon, 2014-04-21 06:47
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
2,593 by SergeyP
Thu, 2016-05-05 02:07
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
2,588 by msardejani
Wed, 2016-10-05 10:53
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
2,582 by ndousis
Mon, 2014-04-21 06:47
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,582 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,581 by rmoretti
Tue, 2014-02-11 06:24
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
2,578 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,575 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,569 by rmoretti
Wed, 2014-07-16 08:07
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,565 by coxford
Mon, 2014-04-21 06:47
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
2,558 by brspurri
Thu, 2020-08-20 13:22
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