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Rosetta 3 - General
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
3,555 |
by phanvy Wed, 2014-07-02 23:32 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
1 |
6,219 |
by rmoretti Tue, 2014-07-01 12:45 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
1 |
2,355 |
by rmoretti Tue, 2014-07-01 12:21 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
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2,024 |
by rmoretti Tue, 2014-07-01 12:07 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
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2,071 |
by nawsad Wed, 2014-06-25 13:26 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
3,023 |
by phanvy Sun, 2014-06-22 23:29 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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5,582 |
by yuvals Sat, 2014-06-21 02:17 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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2,036 |
by nawsad Fri, 2014-06-20 03:00 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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2,206 |
by nawsad Fri, 2014-06-20 02:48 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
14 |
14,812 |
by phanvy Wed, 2014-06-18 07:50 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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2,639 |
by rmoretti Mon, 2014-06-16 08:23 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
1 |
2,255 |
by rmoretti Tue, 2014-06-10 11:34 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
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2,273 |
by rmoretti Mon, 2014-06-09 10:05 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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3,499 |
by rmoretti Tue, 2014-06-03 11:45 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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3,610 |
by szypanther Mon, 2014-05-26 22:03 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,955 |
by rmoretti Fri, 2014-05-23 08:09 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
5 |
5,518 |
by rmoretti Sat, 2014-05-17 14:10 |
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Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
18 |
18,935 |
by jadolfbr Wed, 2014-05-14 08:51 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,215 |
by rmoretti Mon, 2014-05-12 07:50 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
4,516 |
by jadolfbr Mon, 2014-04-21 21:05 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
5,897 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,613 |
by vasek Mon, 2014-04-21 06:48 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
3,042 |
by Run Mon, 2014-04-21 06:48 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
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3,080 |
by rmoretti Mon, 2014-04-21 06:48 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
3,545 |
by rmoretti Mon, 2014-04-21 06:48 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
7,360 |
by rmoretti Mon, 2014-04-21 06:48 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
3,237 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
3,217 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
3,559 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
4,158 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
1 |
2,311 |
by rmoretti Mon, 2014-04-21 06:48 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
4,374 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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5,021 |
by rmoretti Mon, 2014-04-21 06:48 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
5,901 |
by rmoretti Mon, 2014-04-21 06:48 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,592 |
by rmoretti Mon, 2014-04-21 06:48 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
4,696 |
by Lindsay Mon, 2014-04-21 06:48 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
4,466 |
by rmoretti Mon, 2014-04-21 06:48 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
7 |
9,960 |
by rmoretti Mon, 2014-04-21 06:48 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
8 |
16,832 |
by rmoretti Mon, 2014-04-21 06:48 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
6,039 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
11 |
12,649 |
by Lindsay Mon, 2014-04-21 06:48 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
3,043 |
by jtmacd Mon, 2014-04-21 06:48 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
6,688 |
by rmoretti Mon, 2014-04-21 06:48 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
10,514 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,048 |
by rmoretti Mon, 2014-04-21 06:48 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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2,195 |
by rmoretti Mon, 2014-04-21 06:48 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
4,242 |
by MRH Mon, 2014-04-21 06:48 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
5,604 |
by rmoretti Mon, 2014-04-21 06:48 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
3,485 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,759 |
by jarek Mon, 2014-04-21 06:48 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
3,041 |
by MRH Mon, 2014-04-21 06:48 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,848 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
3,106 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
5,875 |
by Lindsay Mon, 2014-04-21 06:48 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,851 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
5,062 |
by Ashafix Mon, 2014-04-21 06:48 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,442 |
by rmoretti Mon, 2014-04-21 06:48 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
1 |
2,139 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,724 |
by JadAbbass Mon, 2014-04-21 06:48 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
6,997 |
by smlewis Mon, 2014-04-21 06:48 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
3,866 |
by frits Mon, 2014-04-21 06:48 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
7,694 |
by rmoretti Mon, 2014-04-21 06:48 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
4,346 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
3,830 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
5,396 |
by rosa Mon, 2014-04-21 06:48 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
3,103 |
by erin_cutts Mon, 2014-04-21 06:48 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
6,730 |
by rosa Mon, 2014-04-21 06:48 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
2,189 |
by rmoretti Mon, 2014-04-21 06:48 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
1 |
2,274 |
by smlewis Mon, 2014-04-21 06:48 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
6,079 |
by fukamitka Mon, 2014-04-21 06:48 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
3,373 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
5 |
5,925 |
by MRH Mon, 2014-04-21 06:48 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
9,070 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,827 |
by jadolfbr Mon, 2014-04-21 06:48 |
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replace a short helix by berk » Wed, 2013-06-05 10:19 |
1 |
2,046 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
3,491 |
by ytao Mon, 2014-04-21 06:48 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
1 |
1,997 |
by smlewis Mon, 2014-04-21 06:48 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
3,136 |
by frits Mon, 2014-04-21 06:48 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,786 |
by banshee Mon, 2014-04-21 06:48 |
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problems with terminal caps by omirus » Tue, 2013-06-25 08:55 |
26 |
29,165 |
by omirus Mon, 2014-04-21 06:48 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,864 |
by berk Mon, 2014-04-21 06:48 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
4,338 |
by rmoretti Mon, 2014-04-21 06:48 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
2,058 |
by rmoretti Mon, 2014-04-21 06:47 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,848 |
by rlwoltz Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
3 |
3,926 |
by eunwook Mon, 2014-04-21 06:47 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
11 |
12,461 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
1 |
2,868 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
11 |
10,347 |
by rmoretti Mon, 2014-04-21 06:47 |
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membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
19 |
17,305 |
by pledor Mon, 2014-04-21 06:47 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
7 |
8,858 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
1 |
2,154 |
by smlewis Mon, 2014-04-21 06:47 |
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protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
16 |
15,717 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
3,765 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
3,057 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
5 |
15,660 |
by nawsad Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
2,479 |
by smlewis Mon, 2014-04-21 06:47 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
5,323 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
4,962 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,874 |
by smlewis Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
8,767 |
by qlj Mon, 2014-04-21 06:47 |
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