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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
2,599 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
3,715 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
2,026 by jklett
Mon, 2014-04-21 06:47
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
957 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
749 by ylwang
Sat, 2019-11-23 06:26
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
13,892 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
2,409 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
2,145 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
2,044 by ctaylor
Mon, 2014-04-21 06:47
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
2,662 by MRH
Mon, 2014-04-21 06:48
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
2,870 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
2,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
3,601 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
1,240 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
1,149 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
1,520 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
2,325 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
1,323 by SergeyP
Mon, 2018-11-12 09:19
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,300 by frits
Mon, 2014-04-21 06:48
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
3,382 by pholland
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
2,311 by eunwook
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
2,681 by cneale
Fri, 2014-03-21 18:13
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
944 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
1,056 by smlewis
Mon, 2018-11-19 13:20
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
1,636 by ela
Thu, 2018-08-09 08:04
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
1,407 by renedominik
Mon, 2018-06-04 00:04
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
1,856 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
3,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
1,454 by ssrb
Tue, 2018-03-06 14:15
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
3,655 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
2,067 by smlewis
Mon, 2016-08-22 10:28
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
3,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
2,144 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
2,060 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
1,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
1,945 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,957 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,421 by alejandro
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
2,502 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
756 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
1,886 by rmoretti
Mon, 2018-01-15 15:34
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
2,770 by vanita
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
2,506 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
2,777 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
2,729 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
2,185 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
1,887 by msun
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
4,862 by rmoretti
Mon, 2014-11-03 16:39
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
1,262 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
931 by rmoretti
Sat, 2019-03-30 12:12
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
2,196 by smlewis
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
2,362 by smlewis
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
2,188 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
2,367 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,360 by rmoretti
Mon, 2014-04-21 06:48
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
2,223 by rmoretti
Mon, 2016-11-14 14:21
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
3,613 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
2,908 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
6,561 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
3,643 by smlewis
Mon, 2014-04-21 06:47
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
2,112 by rmoretti
Mon, 2014-04-21 06:48
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
2,047 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
1,565 by aaxx
Wed, 2019-11-06 01:44
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
576 by ylwang
Tue, 2020-03-24 19:35
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
4,572 by smlewis
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
2,158 by rmoretti
Sun, 2015-07-05 14:28
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
2,587 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
3,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
1,821 by rmoretti
Wed, 2017-06-28 01:33
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
1,042 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
1,944 by smlewis
Fri, 2016-07-29 07:43
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
1,574 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,087 by smlewis
Mon, 2014-04-21 06:47
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
2,172 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
1,427 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
2,586 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
1,472 by matteoferla
Mon, 2018-02-26 02:05
Normal topic How to make a resfile
by dflaher » Fri, 2017-11-03 10:26
3
1,896 by smlewis
Wed, 2017-11-08 12:08
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
2,404 by smlewis
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
3,621 by jurkm
Mon, 2014-04-21 06:47
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
2,724 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
3,868 by smlewis
Mon, 2014-04-21 06:47
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
8,891 by smlewis
Mon, 2014-04-21 06:47
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
2,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
1,424 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
4
2,630 by ate
Fri, 2020-12-11 06:43
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
3,899 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,623 by rosa
Mon, 2014-04-21 06:48
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
3,990 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
1,870 by linucks
Mon, 2017-07-03 09:50
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
2,388 by zlni
Mon, 2014-04-21 06:47
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
2,294 by zharmad
Mon, 2014-04-21 06:47
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
3,688 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
5,235 by Filipe
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
3,069 by smlewis
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
3,422 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
4,760 by einew
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
3,587 by albumns
Mon, 2014-04-21 06:47
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