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Rosetta 3 - General

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Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
1,915 by rmoretti
Mon, 2018-03-19 12:35
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
2,470 by MRH
Mon, 2014-04-21 06:48
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
13,584 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
2,246 by rmoretti
Thu, 2015-04-30 16:09
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
977 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
2,921 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
2,682 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
3,356 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
1,027 by matteoferla
Thu, 2018-10-04 01:30
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
2,614 by vanita
Mon, 2014-04-21 06:47
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,105 by frits
Mon, 2014-04-21 06:48
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
3,714 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
1,355 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
2,128 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
1,109 by SergeyP
Mon, 2018-11-12 09:19
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
1,385 by ela
Thu, 2018-08-09 08:04
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
3,146 by pholland
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
2,100 by eunwook
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
2,526 by cneale
Fri, 2014-03-21 18:13
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
745 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
857 by smlewis
Mon, 2018-11-19 13:20
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
3,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
1,228 by ssrb
Tue, 2018-03-06 14:15
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
1,850 by smlewis
Mon, 2016-08-22 10:28
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
1,214 by renedominik
Mon, 2018-06-04 00:04
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
1,800 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,774 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,284 by alejandro
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
2,328 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
443 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
2,934 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
1,878 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
1,780 by smlewis
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
2,307 by smlewis
Mon, 2014-04-21 06:47
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
3,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
3,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
1,623 by rmoretti
Mon, 2018-01-15 15:34
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
2,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
2,609 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
1,850 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
2,008 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
1,717 by msun
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
4,702 by rmoretti
Mon, 2014-11-03 16:39
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
1,093 by rmoretti
Mon, 2017-10-30 12:02
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
2,566 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
767 by rmoretti
Sat, 2019-03-30 12:12
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
2,206 by smlewis
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
2,029 by rmoretti
Thu, 2015-09-17 12:42
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
2,741 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
6,271 by rmoretti
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
1,939 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
2,216 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,180 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
2,823 by nitroamos
Mon, 2014-04-21 06:47
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
2,029 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
4,348 by smlewis
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
1,982 by rmoretti
Sun, 2015-07-05 14:28
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
2,359 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
1,799 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
1,872 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
1,265 by aaxx
Wed, 2019-11-06 01:44
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
307 by ylwang
Tue, 2020-03-24 19:35
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
1,770 by smlewis
Fri, 2016-07-29 07:43
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
1,403 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
2,193 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
3,752 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
1,564 by rmoretti
Wed, 2017-06-28 01:33
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
828 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
2,825 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
1,148 by smlewis
Mon, 2018-12-31 08:58
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
2,510 by w107kdk
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
2,783 by cossio
Thu, 2014-12-04 05:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
2,657 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
2,808 by renedominik
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
3,257 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
2,387 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
2,529 by japgar
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
2,713 by IAndre
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
3,669 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,424 by rosa
Mon, 2014-04-21 06:48
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
1,199 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
3,769 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
1,651 by linucks
Mon, 2017-07-03 09:50
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
3,479 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
4,994 by Filipe
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
3,170 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
3,364 by albumns
Mon, 2014-04-21 06:47
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
723 by decrSTL
Tue, 2019-08-27 10:24
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
3,278 by smlewis
Mon, 2014-04-21 06:47
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
3,780 by lanselibai
Fri, 2014-12-12 10:27
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
3,079 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
3,090 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
2,632 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
4
2,456 by tylerborrman
Tue, 2015-11-24 13:52
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
2,026 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
1,434 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
2,741 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
3,672 by cossio
Thu, 2015-01-29 11:50
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
4,295 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
5,047 by dgront
Mon, 2014-04-21 06:47
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