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Rosetta 3 - General
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
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1,915 |
by rmoretti Mon, 2018-03-19 12:35 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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2,470 |
by MRH Mon, 2014-04-21 06:48 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
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13,584 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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2,246 |
by rmoretti Thu, 2015-04-30 16:09 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
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977 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
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2,921 |
by smlewis Mon, 2014-04-21 06:47 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
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2,682 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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3,356 |
by rmoretti Mon, 2014-04-21 06:48 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
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1,027 |
by matteoferla Thu, 2018-10-04 01:30 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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2,614 |
by vanita Mon, 2014-04-21 06:47 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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2,105 |
by frits Mon, 2014-04-21 06:48 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
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3,714 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
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1,355 |
by rmoretti Tue, 2017-04-18 13:49 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
3 |
2,128 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
1,109 |
by SergeyP Mon, 2018-11-12 09:19 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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1,385 |
by ela Thu, 2018-08-09 08:04 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
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3,146 |
by pholland Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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2,100 |
by eunwook Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
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2,526 |
by cneale Fri, 2014-03-21 18:13 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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745 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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857 |
by smlewis Mon, 2018-11-19 13:20 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
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3,234 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
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1,228 |
by ssrb Tue, 2018-03-06 14:15 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
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1,850 |
by smlewis Mon, 2016-08-22 10:28 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
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1,214 |
by renedominik Mon, 2018-06-04 00:04 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
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1,800 |
by jadolfbr Mon, 2014-04-21 06:48 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
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1,774 |
by rmoretti Mon, 2015-05-25 11:00 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
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2,284 |
by alejandro Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
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2,328 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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443 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
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2,934 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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1,878 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
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1,780 |
by smlewis Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
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2,307 |
by smlewis Mon, 2014-04-21 06:47 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
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3,478 |
by smlewis Mon, 2014-04-21 06:47 |
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how to get reliable results for carbohydrate docking? by albumns » Sun, 2010-09-05 23:12 |
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3,333 |
by smlewis Mon, 2014-04-21 06:47 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
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1,623 |
by rmoretti Mon, 2018-01-15 15:34 |
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
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2,152 |
by smlewis Mon, 2014-04-21 06:47 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
2,609 |
by JadAbbass Mon, 2014-04-21 06:48 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
3 |
1,850 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
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2,008 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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1,717 |
by msun Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
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4,702 |
by rmoretti Mon, 2014-11-03 16:39 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
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1,093 |
by rmoretti Mon, 2017-10-30 12:02 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
3 |
2,566 |
by smlewis Mon, 2014-04-21 06:47 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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767 |
by rmoretti Sat, 2019-03-30 12:12 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
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2,206 |
by smlewis Mon, 2014-04-21 06:47 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
3 |
2,029 |
by rmoretti Thu, 2015-09-17 12:42 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
3 |
2,741 |
by smlewis Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
6,271 |
by rmoretti Mon, 2014-04-21 06:48 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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1,939 |
by rmoretti Mon, 2014-04-21 06:48 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
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2,216 |
by gipsonb Mon, 2014-04-21 06:47 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
2,180 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
3 |
2,823 |
by nitroamos Mon, 2014-04-21 06:47 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
2,029 |
by rmoretti Mon, 2016-11-14 14:21 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
4,348 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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1,982 |
by rmoretti Sun, 2015-07-05 14:28 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
2,359 |
by rmoretti Mon, 2015-02-09 11:21 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
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1,799 |
by smlewis Mon, 2014-04-21 06:47 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
1,872 |
by rmoretti Mon, 2014-09-29 13:45 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
1,265 |
by aaxx Wed, 2019-11-06 01:44 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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307 |
by ylwang Tue, 2020-03-24 19:35 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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1,770 |
by smlewis Fri, 2016-07-29 07:43 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
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1,403 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
2,193 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
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3,752 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
1,564 |
by rmoretti Wed, 2017-06-28 01:33 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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828 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
2,825 |
by smlewis Mon, 2014-04-21 06:47 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
1,148 |
by smlewis Mon, 2018-12-31 08:58 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
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2,510 |
by w107kdk Mon, 2014-04-21 06:47 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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2,783 |
by cossio Thu, 2014-12-04 05:41 |
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restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
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2,657 |
by rmoretti Thu, 2016-09-08 10:56 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
2,808 |
by renedominik Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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3,257 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
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2,387 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
4 |
2,529 |
by japgar Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
2,713 |
by IAndre Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
3,669 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
3,424 |
by rosa Mon, 2014-04-21 06:48 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
1,199 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
3,769 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
1,651 |
by linucks Mon, 2017-07-03 09:50 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
3,479 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
4,994 |
by Filipe Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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3,170 |
by rlwoltz Mon, 2014-04-21 06:47 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
4 |
3,364 |
by albumns Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
723 |
by decrSTL Tue, 2019-08-27 10:24 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
4 |
3,278 |
by smlewis Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
3,780 |
by lanselibai Fri, 2014-12-12 10:27 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
4 |
3,079 |
by jtmacd Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
3,090 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
4 |
2,632 |
by Martin Floor Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
4 |
2,456 |
by tylerborrman Tue, 2015-11-24 13:52 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
2,026 |
by zhiguang Tue, 2016-11-15 12:27 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
1,434 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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solvation by gw » Wed, 2011-08-31 17:14 |
4 |
2,741 |
by smlewis Mon, 2014-04-21 06:47 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
3,672 |
by cossio Thu, 2015-01-29 11:50 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
4,295 |
by Lindsay Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
5,047 |
by dgront Mon, 2014-04-21 06:47 |
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