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Rosetta 3 - General
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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1,661 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
2,687 |
by smlewis Mon, 2014-04-21 06:47 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
3,112 |
by rmoretti Mon, 2014-04-21 06:47 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
1,909 |
by rmoretti Mon, 2014-04-21 06:48 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
1,690 |
by rmoretti Mon, 2016-11-14 14:21 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
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1,980 |
by harshkhare Mon, 2014-04-21 06:47 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
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553 |
by rmoretti Fri, 2018-08-03 08:42 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
1,673 |
by smlewis Wed, 2016-03-30 09:52 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
4 |
1,453 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
4 |
1,816 |
by smlewis Mon, 2014-04-21 06:47 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
2,048 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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804 |
by rmoretti Wed, 2018-11-21 14:11 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
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2,421 |
by gw Mon, 2014-04-21 06:47 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
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1,824 |
by zlni Mon, 2014-04-21 06:47 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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2,629 |
by lzx32 Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
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1,111 |
by rmoretti Mon, 2018-01-15 15:24 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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3,060 |
by nilkoeg Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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2,334 |
by pardave Mon, 2014-04-21 06:47 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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2,377 |
by cossio Thu, 2014-12-04 05:41 |
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restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
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2,228 |
by rmoretti Thu, 2016-09-08 10:56 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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1,039 |
by linucks Fri, 2018-02-23 08:08 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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1,820 |
by smlewis Mon, 2014-04-21 06:47 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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2,371 |
by rmoretti Tue, 2015-01-06 09:58 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
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1,232 |
by linucks Mon, 2017-07-03 09:50 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
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2,094 |
by pardave Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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3,266 |
by lanselibai Fri, 2014-12-12 10:27 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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8,016 |
by smlewis Mon, 2014-04-21 06:47 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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2,465 |
by smlewis Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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2,014 |
by tylerborrman Tue, 2015-11-24 13:52 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
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1,639 |
by zhiguang Tue, 2016-11-15 12:27 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
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708 |
by eminegenetics Fri, 2018-09-21 07:42 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
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1,794 |
by zharmad Mon, 2014-04-21 06:47 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
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2,111 |
by w107kdk Mon, 2014-04-21 06:47 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
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3,083 |
by cossio Thu, 2015-01-29 11:50 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
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2,554 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
2,218 |
by justin Mon, 2014-04-21 06:47 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
4 |
2,164 |
by japgar Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
4,029 |
by einew Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
2,123 |
by cheyuk Sun, 2015-09-20 02:08 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
4 |
750 |
by rmoretti Fri, 2018-08-03 11:39 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
696 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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1,800 |
by msardejani Sun, 2016-08-07 17:49 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
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2,300 |
by rmoretti Mon, 2014-04-21 06:47 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
2,117 |
by bo Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
2,062 |
by smlewis Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
2,127 |
by jiongzhang Mon, 2014-04-21 06:47 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
4 |
3,531 |
by kwak Mon, 2014-04-21 06:47 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
4 |
2,187 |
by zaldini Fri, 2015-01-02 05:38 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
670 |
by smlewis Mon, 2018-12-31 08:58 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
2,430 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
3,811 |
by rmoretti Tue, 2019-07-09 10:29 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
2,406 |
by renedominik Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
2,002 |
by smlewis Mon, 2014-04-21 06:47 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
4 |
1,770 |
by jtmacd Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
4 |
2,872 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
2,392 |
by IAndre Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
3,194 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
3,096 |
by rosa Mon, 2014-04-21 06:48 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
813 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
4 |
2,946 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
4 |
1,499 |
by ac.research Mon, 2017-09-04 16:43 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
2,195 |
by lanselibai Tue, 2014-12-16 10:48 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
3,365 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
4,427 |
by Filipe Mon, 2014-04-21 06:47 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
4 |
3,071 |
by lqzhang Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
2,557 |
by rlwoltz Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
4 |
2,290 |
by zaldini Wed, 2015-01-07 20:35 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
3,049 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
4 |
2,856 |
by smlewis Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
239 |
by decrSTL Tue, 2019-08-27 10:24 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
4 |
2,112 |
by jwillis Sat, 2015-02-07 20:40 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
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2,184 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
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2,929 |
by albumns Mon, 2014-04-21 06:47 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
1,661 |
by cannond Wed, 2017-03-01 08:05 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
4 |
2,691 |
by jtmacd Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
2,629 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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2,268 |
by Martin Floor Mon, 2014-04-21 06:47 |
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solvation by gw » Wed, 2011-08-31 17:14 |
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2,349 |
by smlewis Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
3,834 |
by Lindsay Mon, 2014-04-21 06:47 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
1,043 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
4 |
2,530 |
by rmoretti Mon, 2015-03-30 14:43 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
2,114 |
by smlewis Wed, 2016-07-13 23:41 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
4,598 |
by dgront Mon, 2014-04-21 06:47 |
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
2,560 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
2,838 |
by phanvy Wed, 2014-10-08 01:42 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
4 |
2,463 |
by albumns Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
4 |
221 |
by maruhuang Thu, 2019-09-26 18:55 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
2,050 |
by saxen Mon, 2016-04-25 10:38 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
2,276 |
by mdyini Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
4 |
3,823 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
3,166 |
by rmoretti Mon, 2014-04-21 06:47 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
4 |
2,178 |
by rmoretti Mon, 2014-04-21 06:47 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
1,323 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
2,167 |
by rmoretti Mon, 2014-04-21 06:47 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
2,134 |
by smlewis Mon, 2014-04-21 06:47 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
5 |
1,517 |
by linucks Wed, 2018-04-25 08:50 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
2,085 |
by Karol Thu, 2016-12-15 01:35 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
893 |
by smlewis Wed, 2018-04-11 11:45 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
5 |
2,072 |
by w107kdk Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
3,010 |
by jadolfbr Mon, 2014-04-21 07:30 |
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