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Rosetta 3 - General
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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2,599 |
by rmoretti Wed, 2014-10-29 14:30 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
3 |
3,715 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
3 |
2,026 |
by jklett Mon, 2014-04-21 06:47 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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957 |
by rmoretti Tue, 2019-10-22 07:05 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
749 |
by ylwang Sat, 2019-11-23 06:26 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
13,892 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
3 |
2,409 |
by rmoretti Thu, 2015-04-30 16:09 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
3 |
2,145 |
by rmoretti Mon, 2018-03-19 12:35 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
3 |
2,044 |
by ctaylor Mon, 2014-04-21 06:47 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
2,662 |
by MRH Mon, 2014-04-21 06:48 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
2,870 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
3 |
2,058 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
3,601 |
by rmoretti Mon, 2014-04-21 06:48 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
1,240 |
by matteoferla Thu, 2018-10-04 01:30 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
3 |
2,194 |
by smlewis Mon, 2014-04-21 06:47 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
1,149 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
3 |
1,520 |
by rmoretti Tue, 2017-04-18 13:49 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
3 |
2,325 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
1,323 |
by SergeyP Mon, 2018-11-12 09:19 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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2,300 |
by frits Mon, 2014-04-21 06:48 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
3 |
3,382 |
by pholland Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
3 |
2,311 |
by eunwook Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
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2,681 |
by cneale Fri, 2014-03-21 18:13 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
944 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
3 |
1,056 |
by smlewis Mon, 2018-11-19 13:20 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
3 |
1,636 |
by ela Thu, 2018-08-09 08:04 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
1,407 |
by renedominik Mon, 2018-06-04 00:04 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
3 |
1,856 |
by smlewis Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
3 |
3,384 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
3 |
1,454 |
by ssrb Tue, 2018-03-06 14:15 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
3,655 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
2,067 |
by smlewis Mon, 2016-08-22 10:28 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
3 |
3,107 |
by smlewis Mon, 2014-04-21 06:47 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
2,144 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
2,060 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
1,935 |
by smlewis Mon, 2014-04-21 06:47 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
1,945 |
by jadolfbr Mon, 2014-04-21 06:48 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
1,957 |
by rmoretti Mon, 2015-05-25 11:00 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
3 |
2,421 |
by alejandro Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
2,502 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
756 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
3,107 |
by smlewis Mon, 2014-04-21 06:47 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
1,886 |
by rmoretti Mon, 2018-01-15 15:34 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
3 |
2,770 |
by vanita Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
2,506 |
by smlewis Mon, 2014-04-21 06:47 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
2,777 |
by JadAbbass Mon, 2014-04-21 06:48 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
3 |
2,729 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
2,185 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
3 |
1,887 |
by msun Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
4,862 |
by rmoretti Mon, 2014-11-03 16:39 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
3 |
1,262 |
by rmoretti Mon, 2017-10-30 12:02 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
931 |
by rmoretti Sat, 2019-03-30 12:12 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
2,196 |
by smlewis Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
2,362 |
by smlewis Mon, 2014-04-21 06:47 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
3 |
2,188 |
by rmoretti Thu, 2015-09-17 12:42 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
2,367 |
by gipsonb Mon, 2014-04-21 06:47 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
2,360 |
by rmoretti Mon, 2014-04-21 06:48 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
2,223 |
by rmoretti Mon, 2016-11-14 14:21 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
3,613 |
by smlewis Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
3 |
2,908 |
by smlewis Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
6,561 |
by rmoretti Mon, 2014-04-21 06:48 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
3,643 |
by smlewis Mon, 2014-04-21 06:47 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
2,112 |
by rmoretti Mon, 2014-04-21 06:48 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
2,047 |
by rmoretti Mon, 2014-09-29 13:45 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
1,565 |
by aaxx Wed, 2019-11-06 01:44 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
576 |
by ylwang Tue, 2020-03-24 19:35 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
4,572 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
3 |
2,158 |
by rmoretti Sun, 2015-07-05 14:28 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
2,587 |
by rmoretti Mon, 2015-02-09 11:21 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
3 |
3,931 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
1,821 |
by rmoretti Wed, 2017-06-28 01:33 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
1,042 |
by jadolfbr Wed, 2019-06-12 20:17 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
1,944 |
by smlewis Fri, 2016-07-29 07:43 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
1,574 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
3,087 |
by smlewis Mon, 2014-04-21 06:47 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
3 |
2,172 |
by rmoretti Thu, 2014-04-10 07:38 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
3 |
1,427 |
by rmoretti Thu, 2017-08-03 08:50 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
2,586 |
by rmoretti Mon, 2014-04-21 06:48 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
1,472 |
by matteoferla Mon, 2018-02-26 02:05 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
3 |
1,896 |
by smlewis Wed, 2017-11-08 12:08 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
3 |
2,404 |
by smlewis Mon, 2014-04-21 06:47 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
3 |
3,621 |
by jurkm Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
2,724 |
by jadolfbr Mon, 2014-04-21 06:47 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
3,868 |
by smlewis Mon, 2014-04-21 06:47 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
8,891 |
by smlewis Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
2,600 |
by smlewis Mon, 2014-04-21 06:47 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
1,424 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
4 |
2,630 |
by ate Fri, 2020-12-11 06:43 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
3,899 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
3,623 |
by rosa Mon, 2014-04-21 06:48 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
3,990 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
1,870 |
by linucks Mon, 2017-07-03 09:50 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
4 |
2,388 |
by zlni Mon, 2014-04-21 06:47 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
2,294 |
by zharmad Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
3,688 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
5,235 |
by Filipe Mon, 2014-04-21 06:47 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
3,069 |
by smlewis Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
3,422 |
by rlwoltz Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
4,760 |
by einew Mon, 2014-04-21 06:47 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
4 |
3,587 |
by albumns Mon, 2014-04-21 06:47 |
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