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Rosetta 3 - General

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Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,428 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
1,014 by matteoferla
Thu, 2018-10-04 01:30
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
579 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
3,633 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
977 by ssrb
Tue, 2016-07-12 10:02
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,160 by nawsad
Wed, 2014-06-25 13:26
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,226 by rmoretti
Tue, 2014-11-04 10:35
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
4,692 by smlewis
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
1,532 by Anonymous
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,016 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
1,720 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,056 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
867 by DanielK
Mon, 2014-04-21 06:47
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
1,451 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
4,692 by rmoretti
Mon, 2014-11-03 16:39
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
2,375 by smlewis
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
1,765 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
1,460 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
1,618 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
3,488 by rmoretti
Mon, 2014-04-21 06:47
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
9,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
2,547 by monica0569
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
2,833 by rmoretti
Mon, 2014-04-21 06:48
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
711 by decrSTL
Tue, 2019-08-27 10:24
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,196 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,523 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
4,234 by doranhen
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
3,735 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
1,251 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
3,754 by jurkm
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
1,343 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,427 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
3,047 by lzx32
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
657 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
1,769 by molon
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
1,941 by jklett
Mon, 2014-04-21 06:47
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
4,236 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
3,583 by ac.research
Mon, 2018-05-14 10:20
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
1,631 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
1,628 by Loki01
Thu, 2017-12-14 06:20
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
450 by connyyu
Thu, 2019-04-18 03:26
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
1,550 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
977 by rmoretti
Tue, 2016-07-12 08:43
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
16,432 by omirus
Mon, 2014-04-21 06:48
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
2,155 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
223 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
883 by rmoretti
Fri, 2018-08-03 08:42
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
3,447 by jadolfbr
Mon, 2014-04-21 07:30
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
33
18,845 by jyy
Wed, 2019-02-20 00:30
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
927 by ac.research
Fri, 2017-08-18 00:53
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
35,780 by rmoretti
Fri, 2015-07-03 13:29
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
2,382 by rmoretti
Mon, 2014-04-21 06:48
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
8,546 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
242 by nannemdp
Tue, 2020-05-26 06:33
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
1,127 by smlewis
Mon, 2018-12-31 08:58
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
3,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
451 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
1,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
1,739 by mpacella
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
1,223 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
3,458 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
2,777 by weallen
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
1,720 by phanvy
Sun, 2014-06-22 23:29
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
922 by exchhattu
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,326 by albumns
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
1,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
724 by orionshih
Tue, 2018-05-01 21:16
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
536 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
1,837 by smlewis
Mon, 2016-08-22 10:28
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,439 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
1,922 by phanvy
Wed, 2014-07-02 23:32
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
2,075 by rmoretti
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,345 by rmoretti
Mon, 2014-06-09 10:05
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,382 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
3,587 by rmoretti
Thu, 2016-02-04 09:29
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
4,109 by qlj
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
2,815 by smlewis
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
3,123 by zeynep
Mon, 2014-04-21 06:47
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
104 by LTJ
Mon, 2020-07-06 14:13
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
3,835 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
3,137 by dgront
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
1,464 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
563 by smlewis
Thu, 2018-06-28 13:34
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
86 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
2,526 by ctaylor
Mon, 2014-04-21 06:47
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
1,575 by SergeyP
Sun, 2015-12-20 01:44
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,867 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
2,742 by pardave
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,453 by Lati
Tue, 2016-01-12 13:28
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,218 by Lati
Fri, 2015-11-20 03:32
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,383 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,422 by smlewis
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34
19
9,826 by smlewis
Mon, 2014-04-21 06:47
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24
35
19,224 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
5,214 by rmoretti
Mon, 2015-06-01 15:27
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
31,366 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,622 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
873 by Martin Floor
Tue, 2018-08-28 13:21
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