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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic How do I add hydrogen atoms to my PDB file?
by monos_morpheus » Wed, 2011-03-30 03:30
6
8,650 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
2,845 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
13
9,207 by rmoretti
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
3,797 by einew
Mon, 2014-04-21 06:47
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
1,685 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,369 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help with get_pdb.py for PDB file cleaning
by lzx32 » Mon, 2011-03-28 02:11
7
5,820 by smlewis
Mon, 2014-04-21 06:47
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
2,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
3,835 by smlewis
Mon, 2014-04-21 06:47
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,343 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
3,796 by einew
Mon, 2014-04-21 06:47
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
1,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
1,992 by einew
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
2,635 by einew
Mon, 2014-04-21 06:47
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
1,896 by smlewis
Mon, 2014-04-21 06:47
Normal topic I am a beginner in rosetta software and need help to build params file
by nais » Fri, 2011-03-18 13:37
3
4,906 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
2,155 by einew
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
3,321 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
1,639 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,218 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,359 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
1,916 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,256 by smlewis
Mon, 2014-04-21 06:47
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
1,514 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
5,297 by smlewis
Mon, 2014-04-21 06:47
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,379 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
2,461 by albumns
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
2,090 by sumukh21
Mon, 2014-04-21 06:47
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,461 by smlewis
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
3,133 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
2,619 by IAndre
Mon, 2014-04-21 06:47
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
1,927 by scombs
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
993 by sumukh21
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,332 by knutjbj
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,202 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
1,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
2,497 by monos_morpheus
Mon, 2014-04-21 06:47
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39
25
14,187 by Gaurav_kumar
Mon, 2014-04-21 06:47
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
2,493 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
2,981 by zeynep
Mon, 2014-04-21 06:47
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
4,985 by albumns
Mon, 2014-04-21 06:47
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
8,456 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
2,608 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
2,807 by smlewis
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
4,365 by einew
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
1,922 by kaue
Mon, 2014-04-21 06:47
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,406 by smlewis
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,314 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,406 by smlewis
Mon, 2014-04-21 06:47
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
3,220 by smlewis
Mon, 2014-04-21 06:47
Hot topic Collecting 3.2 documentation holes
by smlewis » Wed, 2011-01-26 10:39
23
10,435 by FrankVerdin86
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
2,947 by jtmacd
Mon, 2014-04-21 06:47
Normal topic how to cluster loop?
by albumns » Wed, 2011-01-05 19:48
6
3,968 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
4,909 by dgront
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
2,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
8,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
1,929 by smlewis
Mon, 2014-04-21 06:47
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,558 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,364 by smlewis
Mon, 2014-04-21 06:47
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
6,384 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
3,619 by smlewis
Mon, 2014-04-21 06:47
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,217 by joseph
Mon, 2014-04-21 06:47
Hot topic high resolution protein docking doesn't work
by albumns » Thu, 2010-12-02 02:36
17
7,737 by albumns
Mon, 2014-04-21 06:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
1,624 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
1,831 by ndousis
Mon, 2014-04-21 06:47
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,521 by smlewis
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
1,522 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
3,331 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
2,689 by albumns
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
1,582 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
1,435 by smlewis
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,581 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,393 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
4,030 by smlewis
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
1,633 by lvtun
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
1,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
1,401 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,136 by smlewis
Mon, 2014-04-21 06:47
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
3,859 by kwak
Mon, 2014-04-21 06:47
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
3,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
1,539 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
2,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,420 by dnasmith
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,529 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
1,600 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
1,642 by barak
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,216 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
3,299 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
1,512 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax under different directories without -constant_seed -jran flag
by xpzhang » Wed, 2010-09-15 14:56
6
4,725 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
4,729 by mahajanr
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,221 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
2,851 by biofisikx
Mon, 2014-04-21 06:47
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