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Rosetta 3 - General

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Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
2,718 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,008 by rmoretti
Mon, 2015-03-30 14:43
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
4,404 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
3,767 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
2,676 by rmoretti
Mon, 2014-04-21 06:47
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
2,300 by msardejani
Sun, 2016-08-07 17:49
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
2,606 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
840 by matteoferla
Mon, 2019-12-23 07:24
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
2,542 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
1,442 by rmoretti
Wed, 2018-11-21 14:11
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
2,921 by gw
Mon, 2014-04-21 06:47
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
2,657 by zaldini
Fri, 2015-01-02 05:38
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
3,165 by lzx32
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
3,575 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
2,857 by pardave
Mon, 2014-04-21 06:47
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
1,665 by rmoretti
Mon, 2018-01-15 15:24
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
2,254 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
4,720 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI
by linucks » Tue, 2018-02-13 03:41
4
1,640 by linucks
Fri, 2018-02-23 08:08
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
2,270 by zlni
Mon, 2014-04-21 06:47
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
3,540 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
2,172 by ac.research
Mon, 2017-09-04 16:43
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
2,668 by lanselibai
Tue, 2014-12-16 10:48
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
729 by matteoferla
Sat, 2020-03-21 09:14
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
2,216 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
2,622 by pardave
Mon, 2014-04-21 06:47
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
2,748 by zaldini
Wed, 2015-01-07 20:35
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
759 by Kazu
Mon, 2020-05-18 10:52
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
8,769 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
2,589 by jwillis
Sat, 2015-02-07 20:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
2,773 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
2,816 by rmoretti
Tue, 2015-01-06 09:58
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
2,263 by cannond
Wed, 2017-03-01 08:05
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
2,923 by smlewis
Mon, 2014-04-21 06:47
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
2,216 by zharmad
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
1,240 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
706 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
2,684 by smlewis
Wed, 2016-07-13 23:41
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
2,991 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
2,719 by justin
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
4,656 by einew
Mon, 2014-04-21 06:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
2,580 by saxen
Mon, 2016-04-25 10:38
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
2,653 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
3,481 by phanvy
Wed, 2014-10-08 01:42
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
1,299 by rmoretti
Fri, 2018-08-03 11:39
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
1,813 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
1,178 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
2,647 by japgar
Mon, 2014-04-21 06:47
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
2,562 by bo
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
2,794 by rmoretti
Mon, 2014-04-21 06:47
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
2,562 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
2,150 by smlewis
Wed, 2016-03-30 09:52
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
2,086 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
2,733 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
4,179 by kwak
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
2,925 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
1,286 by smlewis
Mon, 2018-12-31 08:58
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
2,906 by cossio
Thu, 2014-12-04 05:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
2,780 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
2,890 by renedominik
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
3,374 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
2,505 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
2,835 by IAndre
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
3,784 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
3,536 by rosa
Mon, 2014-04-21 06:48
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
1,320 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
2,183 by jtmacd
Mon, 2014-04-21 06:47
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
3,888 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
1,749 by linucks
Mon, 2017-07-03 09:50
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
3,607 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
5,121 by Filipe
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
3,296 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
1,799 by smlewis
Tue, 2018-07-03 11:22
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
1,852 by smlewis
Wed, 2018-03-21 08:42
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
4,089 by einew
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
2,872 by pachecoj
Sat, 2014-08-09 06:33
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
2,950 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
6,385 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
5,104 by mahajanr
Mon, 2014-04-21 06:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
2,852 by banshee
Tue, 2016-04-26 00:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
7,667 by dgront
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
3,534 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
10,225 by nawsad
Mon, 2014-04-21 06:47
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
1,761 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
3,089 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
1,576 by smlewis
Tue, 2018-06-12 10:54
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
2,310 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
1,404 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
265 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
4,042 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
3,679 by doranhen
Mon, 2014-04-21 06:47
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
6,531 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
2,500 by linucks
Wed, 2018-04-25 08:50
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
2,644 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
3,684 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
2,338 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
1,483 by smlewis
Wed, 2018-04-11 11:45
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
4,141 by smlewis
Mon, 2014-04-21 06:48
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
3,268 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
1,504 by jadolfbr
Mon, 2019-01-28 08:46
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