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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
2,901 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
2,464 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
905 by smlewis
Tue, 2018-06-12 10:54
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
1,081 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
1,693 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
470 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
3,474 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
3,012 by doranhen
Mon, 2014-04-21 06:47
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
5,784 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
3,017 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
1,431 by linucks
Wed, 2018-04-25 08:50
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
1,535 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
831 by smlewis
Wed, 2018-04-11 11:45
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
3,407 by smlewis
Mon, 2014-04-21 06:48
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
2,964 by smlewis
Mon, 2014-04-21 06:47
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
2,748 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
695 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
2,738 by aroop
Mon, 2014-04-21 06:47
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
4,249 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
5
2,806 by Payal Chatterjee
Wed, 2016-02-24 10:35
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
1,843 by cannond
Wed, 2017-03-08 03:00
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
2,582 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
2,471 by obdulia
Wed, 2016-07-13 09:11
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
3,873 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
5
1,511 by BioPython
Fri, 2019-07-12 03:15
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
3,439 by ssrb
Tue, 2015-09-22 08:35
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
4,433 by rmoretti
Thu, 2016-04-28 15:53
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
3,116 by rmoretti
Mon, 2017-08-14 09:06
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
3,410 by rmoretti
Mon, 2014-04-21 06:47
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
4,090 by rmoretti
Mon, 2014-04-21 06:48
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
1,452 by freedman
Mon, 2017-03-06 13:24
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
3,966 by ritacc18
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
1,615 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
3,534 by qlj
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
3,149 by MRH
Mon, 2014-04-21 06:48
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
3,408 by einew
Mon, 2014-04-21 06:47
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
2,937 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
2,006 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
4,301 by mahajanr
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
871 by salvatta
Mon, 2018-09-10 10:04
Normal topic how to use AbinitioRelax.mpi.linuxgccrelease?
by albumns » Mon, 2012-03-26 22:50
5
3,577 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
2,357 by rpache
Mon, 2014-04-21 06:47
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
2,706 by rmoretti
Sat, 2014-05-17 14:10
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
2,027 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
2,421 by attesor
Mon, 2014-04-21 06:47
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
2,023 by Karol
Thu, 2016-12-15 01:35
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
2,525 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
1,083 by Loki01
Thu, 2017-12-14 06:20
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
2,625 by glemmon
Mon, 2014-04-21 06:47
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
2,962 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
1,267 by smlewis
Wed, 2017-08-16 08:30
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
3,754 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
3,654 by smlewis
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
2,662 by zeynep
Mon, 2014-04-21 06:47
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
2,106 by smlewis
Tue, 2016-08-30 13:47
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
4,580 by albumns
Mon, 2014-04-21 06:47
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
2,748 by rmoretti
Sat, 2015-04-25 10:05
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
2,508 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
1,637 by rmoretti
Thu, 2017-08-03 09:01
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
3,509 by smlewis
Mon, 2014-04-21 06:47
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
2,972 by rmoretti
Fri, 2014-03-28 09:03
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
3,372 by smlewis
Mon, 2014-04-21 06:47
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
2,779 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
428 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
2,258 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
3,050 by tevang
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
2,143 by albumns
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
3,130 by rmoretti
Thu, 2016-04-28 16:15
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
3,114 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
2,901 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define specific residues in alascan ?
by Park » Mon, 2011-06-13 19:56
6
3,819 by smlewis
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
4,890 by qlj
Mon, 2014-04-21 06:47
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
3,591 by smlewis
Mon, 2014-04-21 06:47
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
2,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
2,836 by fukamitka
Mon, 2014-04-21 06:48
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
2,311 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
3,673 by doranhen
Mon, 2014-04-21 06:47
Normal topic Relax structure using Membrane Environment Scoring Function
by anna.duncan » Thu, 2010-02-04 08:01
6
5,030 by jruhym
Mon, 2014-04-21 06:47
Normal topic How do I add hydrogen atoms to my PDB file?
by monos_morpheus » Wed, 2011-03-30 03:30
6
7,907 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fe3p Heme Iron Unrecognized Despite Loading Hem Params
by vsjasion » Fri, 2011-09-02 10:37
6
4,435 by tigerous
Mon, 2014-04-21 06:47
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
3,610 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
2,532 by byin
Mon, 2014-04-21 06:47
Normal topic how to cluster loop?
by albumns » Wed, 2011-01-05 19:48
6
3,558 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
1,892 by ac.research
Fri, 2017-08-18 00:57
Normal topic Using Patches in Rosetta
by JS » Wed, 2010-03-10 13:32
6
4,292 by JS
Mon, 2014-04-21 06:47
Normal topic How to run Rosetta3 in parallel
by lennylv » Mon, 2009-03-30 04:21
6
4,932 by rmoretti
Mon, 2014-04-21 06:47
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
1,889 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
2,140 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
4,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
2,276 by weallen
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
2,480 by biofisikx
Mon, 2014-04-21 06:47
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
4,654 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
3,914 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
2,492 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
1,045 by rmoretti
Mon, 2018-08-20 11:45
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
3,096 by robren
Mon, 2014-04-21 06:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
1,153 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
3,124 by jurkm
Mon, 2014-04-21 06:47
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
1,017 by rmoretti
Mon, 2018-11-12 14:29
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
2,396 by jarod
Mon, 2014-04-21 06:47
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