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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
4,088 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
1,266 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
2,383 by japgar
Mon, 2014-04-21 06:47
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
2,569 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
2,001 by zlni
Mon, 2014-04-21 06:47
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
3,419 by cossio
Thu, 2015-01-29 11:50
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
4,855 by dgront
Mon, 2014-04-21 06:47
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
2,782 by rmoretti
Mon, 2014-04-21 06:47
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
2,458 by mdyini
Mon, 2014-04-21 06:47
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
454 by maruhuang
Thu, 2019-09-26 18:55
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
2,647 by albumns
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
2,354 by cheyuk
Sun, 2015-09-20 02:08
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
4,058 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
3,449 by rmoretti
Mon, 2014-04-21 06:47
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
2,406 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
2,535 by rmoretti
Tue, 2015-01-06 09:58
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
2,364 by rmoretti
Mon, 2014-04-21 06:47
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
2,023 by msardejani
Sun, 2016-08-07 17:49
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
2,344 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
455 by matteoferla
Mon, 2019-12-23 07:24
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
2,623 by gw
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
2,258 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
1,124 by rmoretti
Wed, 2018-11-21 14:11
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
3,274 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
2,576 by pardave
Mon, 2014-04-21 06:47
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
1,360 by rmoretti
Mon, 2018-01-15 15:24
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
2,322 by w107kdk
Mon, 2014-04-21 06:47
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
2,366 by zaldini
Fri, 2015-01-02 05:38
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
2,861 by lzx32
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
4,257 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
1,110 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
3,037 by aroop
Mon, 2014-04-21 06:47
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
4,636 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
5
3,143 by Payal Chatterjee
Wed, 2016-02-24 10:35
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
2,179 by cannond
Wed, 2017-03-08 03:00
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
4,644 by mahajanr
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
2,928 by zeynep
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
2,879 by obdulia
Wed, 2016-07-13 09:11
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
3,981 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
4,920 by albumns
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
4,329 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
5
2,067 by BioPython
Fri, 2019-07-12 03:15
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
2,557 by smlewis
Mon, 2014-04-21 06:47
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
3,735 by ssrb
Tue, 2015-09-22 08:35
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
4,761 by rmoretti
Thu, 2016-04-28 15:53
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
3,820 by rmoretti
Mon, 2017-08-14 09:06
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
3,818 by rmoretti
Mon, 2014-04-21 06:47
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
4,409 by rmoretti
Mon, 2014-04-21 06:48
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
1,757 by freedman
Mon, 2017-03-06 13:24
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
3,893 by qlj
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
3,468 by MRH
Mon, 2014-04-21 06:48
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
4,280 by ritacc18
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
1,907 by pachecoj
Wed, 2017-03-29 12:32
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
3,734 by einew
Mon, 2014-04-21 06:47
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
3,261 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
1,313 by salvatta
Mon, 2018-09-10 10:04
Normal topic how to use AbinitioRelax.mpi.linuxgccrelease?
by albumns » Mon, 2012-03-26 22:50
5
3,984 by smlewis
Mon, 2014-04-21 06:47
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
2,975 by rmoretti
Sat, 2014-05-17 14:10
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
2,684 by rpache
Mon, 2014-04-21 06:47
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
2,382 by Karol
Thu, 2016-12-15 01:35
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
3,291 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
2,899 by glemmon
Mon, 2014-04-21 06:47
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
3,249 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
1,631 by smlewis
Wed, 2017-08-16 08:30
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
2,872 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
1,434 by Loki01
Thu, 2017-12-14 06:20
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
4,042 by rmoretti
Mon, 2014-04-21 06:48
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
2,390 by smlewis
Tue, 2016-08-30 13:47
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
394 by matteoferla
Wed, 2019-11-20 02:32
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
2,312 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
3,036 by rmoretti
Sat, 2015-04-25 10:05
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
2,713 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
1,990 by rmoretti
Thu, 2017-08-03 09:01
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
1,391 by smlewis
Tue, 2018-07-03 11:22
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
1,463 by smlewis
Wed, 2018-03-21 08:42
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
3,737 by einew
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
2,547 by pachecoj
Sat, 2014-08-09 06:33
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
2,629 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
5,849 by jtmacd
Mon, 2014-04-21 06:47
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
2,282 by w107kdk
Mon, 2014-04-21 06:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
2,467 by banshee
Tue, 2016-04-26 00:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
9,422 by nawsad
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
7,230 by dgront
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
3,167 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
2,702 by attesor
Mon, 2014-04-21 06:47
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
2,747 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
1,245 by smlewis
Tue, 2018-06-12 10:54
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
1,435 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
1,976 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
970 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
3,324 by doranhen
Mon, 2014-04-21 06:47
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
3,720 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
6,139 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
3,319 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
1,962 by linucks
Wed, 2018-04-25 08:50
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
2,830 by smlewis
Mon, 2014-04-21 06:47
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
1,930 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
3,752 by smlewis
Mon, 2014-04-21 06:48
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
1,137 by smlewis
Wed, 2018-04-11 11:45
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
2,968 by jadolfbr
Mon, 2014-04-21 06:47
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