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Rosetta 3 - General
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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2,412 |
by eminegenetics Wed, 2018-07-18 13:48 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
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3,638 |
by rmoretti Mon, 2014-04-21 06:47 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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3,448 |
by ctaylor Mon, 2014-04-21 06:47 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
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2,743 |
by rmoretti Mon, 2014-04-21 06:47 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
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2,807 |
by JadAbbass Tue, 2014-02-18 07:27 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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2,776 |
by rmoretti Fri, 2015-01-09 10:59 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
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2,459 |
by sgaray Fri, 2021-06-25 11:26 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
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2,824 |
by smlewis Mon, 2014-04-21 06:47 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
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2,902 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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2,505 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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1,130 |
by asbelx Mon, 2022-06-06 23:15 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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667 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,295 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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5,074 |
by smlewis Mon, 2014-04-21 06:47 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
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2,895 |
by ylwang Wed, 2018-11-14 03:03 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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3,622 |
by jklett Mon, 2014-04-21 06:47 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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3,465 |
by scombs Mon, 2014-04-21 06:47 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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1,112 |
by rmoretti Thu, 2022-09-29 00:15 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
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2,121 |
by matteoferla Mon, 2021-09-20 06:05 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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1,065 |
by rmoretti Mon, 2022-11-14 07:27 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,905 |
by tsjain Mon, 2014-04-21 06:47 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
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4,387 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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2,417 |
by rmoretti Sat, 2019-03-30 12:12 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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2,088 |
by danpf Mon, 2021-05-10 10:04 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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3,507 |
by ctaylor Mon, 2014-04-21 06:47 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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3,352 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,779 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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10,557 |
by rmoretti Mon, 2015-02-09 09:09 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
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4,803 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,990 |
by jadolfbr Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
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5,120 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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5,038 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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3,421 |
by rmoretti Mon, 2016-03-07 14:20 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,719 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
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3,684 |
by IAndre Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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3,418 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
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5,076 |
by Ashafix Mon, 2014-04-21 06:48 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
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3,458 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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1,086 |
by ldx022 Sat, 2023-03-11 16:53 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
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3,884 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
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4,293 |
by smlewis Mon, 2014-04-21 06:47 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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3,578 |
by smlewis Mon, 2014-04-21 06:47 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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2,112 |
by ylwang Tue, 2020-03-24 19:35 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
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4,146 |
by monica0569 Mon, 2014-04-21 06:47 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
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4,562 |
by dgront Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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3,213 |
by jadolfbr Wed, 2019-06-12 20:17 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
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3,578 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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3,811 |
by alejandro Mon, 2014-04-21 06:47 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
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1,565 |
by ssrb Tue, 2022-07-05 11:07 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
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5,261 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
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4,920 |
by rmoretti Wed, 2015-08-12 15:03 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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3,526 |
by fred Fri, 2014-04-04 11:34 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
1,857 |
by matteoferla Fri, 2021-08-20 08:37 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
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4,449 |
by einew Mon, 2014-04-21 06:47 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
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3,643 |
by smlewis Mon, 2014-04-21 06:47 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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3,572 |
by phanvy Wed, 2014-07-02 23:32 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,956 |
by everyday847 Tue, 2017-11-28 13:07 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,619 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
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2,663 |
by smlewis Wed, 2018-04-04 10:42 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,572 |
by smlewis Mon, 2014-04-21 06:47 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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1,011 |
by rmoretti Mon, 2023-05-15 15:23 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,923 |
by rmoretti Tue, 2023-05-09 15:32 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
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1,282 |
by aniyaz Wed, 2023-01-11 01:24 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
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4,466 |
by smlewis Mon, 2014-04-21 06:47 |
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
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2,824 |
by smlewis Wed, 2018-04-18 19:03 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,914 |
by rmoretti Mon, 2014-04-21 06:47 |
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relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
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3,126 |
by allan.ferrari Tue, 2017-01-03 05:02 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
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1,954 |
by rmoretti Wed, 2021-03-17 13:52 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
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3,772 |
by harshkhare Mon, 2014-04-21 06:47 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
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2,712 |
by rmoretti Fri, 2018-08-03 08:42 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
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955 |
by rmoretti Mon, 2023-01-30 08:04 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
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4,393 |
by smlewis Mon, 2014-04-21 06:47 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
5,339 |
by rmoretti Mon, 2014-04-21 06:47 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
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3,492 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
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5,639 |
by smlewis Mon, 2014-04-21 06:47 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
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4,482 |
by rmoretti Mon, 2014-04-21 06:48 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
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3,788 |
by SergeyP Thu, 2016-02-04 00:07 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
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1,632 |
by csvajda Mon, 2022-03-07 07:46 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
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4,278 |
by smlewis Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
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4,195 |
by rmoretti Mon, 2014-04-21 06:47 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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4,531 |
by jadolfbr Mon, 2014-04-21 21:05 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
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3,177 |
by smlewis Thu, 2016-06-30 08:44 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
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3,669 |
by einew Mon, 2014-04-21 06:47 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
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3,736 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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6,470 |
by rmoretti Thu, 2014-07-17 09:21 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,849 |
by rmoretti Sat, 2017-12-16 12:19 |
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
3 |
2,989 |
by rmoretti Tue, 2021-02-09 09:22 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
4,352 |
by rmoretti Mon, 2014-04-21 06:48 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
4,294 |
by matteoferla Sat, 2017-08-05 07:18 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
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3,511 |
by smlewis Mon, 2014-04-21 06:47 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
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15,106 |
by smlewis Mon, 2014-04-21 06:47 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
5,101 |
by Sandy Fri, 2015-08-07 15:49 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
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6,466 |
by rosend Fri, 2015-12-18 19:39 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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3,236 |
by smlewis Tue, 2016-12-20 10:40 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
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3,247 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
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3,487 |
by ac.research Sun, 2017-09-24 11:25 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
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1,856 |
by matteoferla Mon, 2022-01-10 06:44 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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6,116 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
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4,398 |
by smlewis Thu, 2016-04-21 16:00 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
5,355 |
by smlewis Mon, 2014-04-21 06:47 |
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