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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
30,695 by G-Jade
Fri, 2020-12-18 22:40
Normal topic Score and I_sc in ROSIE symmetric_docking output
by AdoCbl » Sun, 2015-08-09 00:26
11
13,775 by rmoretti
Tue, 2015-11-24 16:33
Normal topic Regarding snugdock Ag-Ab score
by ss » Mon, 2018-12-10 14:47
7
6,366 by ss
Thu, 2019-01-03 09:08
Normal topic Sequence Tolerance Failed
by Dstork » Tue, 2017-01-03 07:13
6
6,583 by Sergey
Mon, 2017-01-09 16:37
Normal topic how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine
by jai_INMAS » Thu, 2014-08-07 01:49
6
10,790 by jai_INMAS
Fri, 2014-08-15 08:02
Normal topic Rosie Server Docking2, wrong plots output?
by Conan » Tue, 2015-04-21 12:18
6
8,711 by AdoCbl
Sun, 2015-08-09 14:38
Normal topic LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE
by gabeliluo1 » Wed, 2016-01-06 16:23
5
6,838 by rmoretti
Thu, 2016-02-04 07:39
Normal topic RMSD values in docking2 and symmetric_docking runs
by AdoCbl » Sun, 2015-08-09 00:48
4
6,861 by rmoretti
Fri, 2015-09-04 13:57
Normal topic ROSIE academic email verification
by Yang Xie » Fri, 2022-09-23 06:37
4
1,206 by Yang Xie
Fri, 2022-09-23 10:09
Normal topic FARFAR2 error
by lijunnju » Tue, 2020-02-11 08:09
4
3,185 by pomden31
Tue, 2022-10-04 00:37
Normal topic Antibody prediction with ROSIE failed
by Sunyp_IM » Wed, 2017-08-02 23:45
4
4,404 by Sergey
Thu, 2019-05-09 08:15
Normal topic Ways to improve ROSIE symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 13:39
4
6,179 by IAndre
Tue, 2015-09-29 08:10
Normal topic docking2 results seem to not have contacting residues
by wagnerek » Tue, 2015-10-27 10:30
4
6,035 by AdoCbl
Sun, 2015-11-15 08:10
Normal topic Academic domain not listed
by larae » Mon, 2022-05-02 02:50
4
1,580 by SKlab
Mon, 2022-05-16 09:12
Normal topic A table of residue-residue pair energies for residues which interact across the docking interface missing in output
by awaring » Mon, 2013-04-22 14:47
4
9,435 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol
by iphan » Mon, 2016-09-12 10:58
4
5,876 by rmoretti
Mon, 2016-10-03 10:44
Normal topic Snugdock
by MIke Kent » Mon, 2019-12-16 22:10
4
4,303 by MIke Kent
Tue, 2019-12-24 08:02
Normal topic Academic email verification
by KrystofKnapp » Thu, 2023-02-16 08:05
3
935 by Mikelodeon
Thu, 2023-04-27 09:33
Normal topic problems with docking
by msironi » Thu, 2016-10-27 00:46
3
4,247 by Sergey
Mon, 2016-11-21 11:03
Normal topic 502 Bad Gateway
by lijunnju » Fri, 2022-10-21 12:58
3
1,020 by Sergey
Mon, 2022-10-24 14:07
Normal topic Cannot login ROSIE-2 (docking-3)
by Pdk089 » Mon, 2022-04-25 11:30
3
1,299 by azeke908
Wed, 2023-02-22 20:12
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
3,978 by rmoretti
Thu, 2017-07-13 15:19
Normal topic Job 「№15623」has failed
by fglaser » Tue, 2015-07-07 00:17
3
5,570 by rmoretti
Tue, 2015-07-14 14:35
Normal topic Can you change background color of pdb file pictures?
by AdoCbl » Sun, 2015-08-09 01:47
3
5,268 by AdoCbl
Tue, 2015-08-18 19:17
Normal topic Academic verification UAB
by Rasekuro » Fri, 2023-05-05 03:37
3
744 by Rita Melo
Mon, 2023-05-29 08:24
Normal topic Error messages
by dmoser1 » Tue, 2023-11-14 08:57
3
398 by Sergey
Thu, 2023-11-16 10:41
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
4,249 by Sergey
Mon, 2016-11-14 14:48
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
4,249 by rmoretti
Thu, 2017-06-29 07:58
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
3,215 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic peptide design
by Miriam Gulman » Wed, 2023-10-25 00:09
3
430 by rmoretti
Mon, 2023-10-30 07:21
Normal topic docking2: will the real prepacked PDB stand up?
by David Weis » Tue, 2017-02-21 10:04
3
3,988 by rmoretti
Tue, 2017-02-28 08:34
Normal topic docking2: local_docking vs docking_local_refine
by AdoCbl » Sat, 2015-08-08 23:57
3
5,245 by AdoCbl
Wed, 2015-08-26 19:44
Normal topic Error Fasta file
by gabrielab » Mon, 2022-08-15 00:41
3
1,227 by Sergey
Mon, 2022-08-29 12:43
Normal topic farfar2 error
by CAOSISI » Tue, 2023-02-28 18:56
3
1,123 by CAOSISI
Mon, 2023-03-13 08:40
Normal topic Academic Email Verification
by shahina-mazumdar » Wed, 2023-10-25 00:09
2
328 by shahina-mazumdar
Thu, 2023-10-26 01:22
Normal topic supercharge problems
by hooria » Tue, 2016-06-14 05:29
2
3,590 by smlewis
Wed, 2016-06-15 07:50
Normal topic Academic address
by almeida85 » Mon, 2022-09-26 07:25
2
774 by almeida85
Thu, 2022-09-29 00:10
Normal topic Academic email address verification
by bozturk » Wed, 2022-11-02 06:01
2
878 by bozturk
Thu, 2022-11-03 00:14
Normal topic Rosie GitHub Authentication
by ethandsmith » Fri, 2022-12-09 07:38
2
1,150 by ethandsmith
Sat, 2022-12-10 07:23
Normal topic Ligand docking score.sc file containing more structures than produced
by Delfosse57 » Sat, 2022-07-16 10:44
2
974 by Delfosse57
Mon, 2022-07-18 11:09
Normal topic Error 500 Docking protein
by Sherpaman » Tue, 2014-05-27 01:32
2
4,036 by Sergey
Wed, 2014-05-28 13:16
Normal topic Docking2: Mismatch between score file and graph
by Ashafix » Sat, 2014-11-29 07:44
2
4,193 by AdoCbl
Sun, 2015-08-09 14:37
Normal topic My academic institution domain is not listed.
by mebigi » Fri, 2022-04-08 07:44
2
1,081 by mebigi
Mon, 2022-04-11 16:35
Normal topic Academic Email Verification
by arashsadri » Fri, 2024-02-02 04:47
2
193 by arashsadri
Sat, 2024-02-03 02:29
Normal topic Academic email adress
by StephanieAgu » Mon, 2022-11-14 23:54
2
1,025 by StephanieAgu
Wed, 2022-11-16 05:19
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
3,601 by nmarze
Wed, 2016-05-25 14:54
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
3,764 by Conan
Sat, 2015-04-25 11:31
Normal topic verified academic email address
by yang » Wed, 2022-12-07 23:36
2
1,271 by ramezani1991
Sat, 2023-02-04 06:02
Normal topic Academic address not verified during rosie login
by s.shankar » Thu, 2022-07-14 09:40
2
989 by s.shankar
Fri, 2022-07-15 12:31
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
3,063 by Loki01
Mon, 2018-03-19 13:45
Normal topic 504 Gateway Time-out
by larae » Wed, 2022-08-31 03:38
2
822 by Sergey
Wed, 2022-08-31 09:12
Normal topic Stepwise error
by debostuti » Wed, 2021-10-06 08:57
2
1,342 by debostuti
Fri, 2021-10-08 00:29
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
2,599 by MIke Kent
Thu, 2019-03-28 11:26
Normal topic Problems with the RNA Denovo server
by mariaclausen » Tue, 2014-11-25 01:45
2
3,967 by mariaclausen
Thu, 2014-11-27 01:30
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
3,209 by gabr
Tue, 2019-11-19 13:57
Normal topic Supercharge server
by alva » Wed, 2014-07-02 17:36
2
4,554 by hooria
Mon, 2016-06-13 11:08
Normal topic Academic address not verified during Rosie login
by oscarpramos » Wed, 2022-10-19 00:31
2
915 by MpupoM
Wed, 2022-11-02 01:35
Normal topic Academic email verification
by jix1994 » Mon, 2024-02-19 19:01
2
96 by jix1994
Tue, 2024-02-20 16:53
Normal topic RosettaDock output
by taeyoungahn » Wed, 2022-11-23 17:04
2
1,226 by taeyoungahn
Sun, 2022-11-27 20:12
Normal topic How to change your ROSIE username or password?
by AdoCbl » Sun, 2015-08-09 00:08
2
4,058 by AdoCbl
Tue, 2015-08-18 19:09
Normal topic sequence_tolerance queue stuck
by Fred Muskett » Fri, 2021-09-03 08:08
2
1,478 by line
Fri, 2022-02-25 00:40
Normal topic Docking-Error 500
by edebenedictis » Wed, 2016-08-03 12:34
2
3,421 by Sergey
Wed, 2016-08-03 14:21
Normal topic How to improve ROSIE docking2 results?
by AdoCbl » Sun, 2015-08-09 01:22
2
4,150 by AdoCbl
Tue, 2015-08-18 19:19
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
4,115 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic rosie github log in
by sperrrinpi » Wed, 2023-04-19 06:16
2
596 by sperrrinpi
Thu, 2023-04-20 06:38
Normal topic pKa job submitting problem
by syoifczeri » Tue, 2015-02-17 21:41
2
3,916 by syoifczeri
Wed, 2015-02-18 19:15
Normal topic Academic domain missing
by yoann.vial » Wed, 2022-04-13 00:20
2
1,059 by Sergey
Fri, 2022-04-15 10:20
Normal topic Antibody Server is down
by Jogi » Thu, 2012-06-21 04:50
2
5,449 by Sergey
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking Jobs not running
by Flaviyan » Wed, 2014-02-05 06:41
2
6,057 by AdoCbl
Sat, 2015-08-08 22:38
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
1,957 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic Academic verification
by AnaFernandes-CTN » Tue, 2023-05-30 08:57
1
430 by Sergey
Tue, 2023-05-30 11:32
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
4,410 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
852 by Sergey
Mon, 2022-03-21 12:10
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
2,145 by everyday847
Mon, 2019-11-11 14:39
Normal topic email verification of rosie via github
by tenbaegger » Wed, 2024-01-17 17:31
1
165 by Sergey
Mon, 2024-01-22 13:42
Normal topic Prepack step fail in docking2
by gretahultqvist » Thu, 2015-06-11 00:20
1
3,187 by rmoretti
Fri, 2015-07-03 12:14
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
2,200 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
1
7,623 by jaw315
Thu, 2022-06-09 10:26
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
2,686 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,792 by rmoretti
Fri, 2016-04-29 09:27
Normal topic Academic Email
by Teo » Tue, 2022-09-06 08:42
1
888 by Sergey
Tue, 2022-09-06 11:10
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
1,170 by everyday847
Fri, 2021-10-08 10:29
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
2,025 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
1,857 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Academic email address verification
by whu » Thu, 2023-07-06 09:29
1
385 by Sergey
Fri, 2023-07-07 10:41
Normal topic Academic email verification
by dianahinojosa » Fri, 2023-10-27 19:17
1
264 by Sergey
Mon, 2023-10-30 11:48
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,711 by smlewis
Sun, 2016-08-28 12:04
Normal topic Academic address not verified during Rosie login
by Jean-Etienne » Thu, 2022-10-06 22:49
1
696 by Sergey
Fri, 2022-10-07 15:26
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,780 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
778 by Sergey
Fri, 2022-05-20 12:14
Normal topic Antibody scoring
by larae » Wed, 2022-06-22 11:14
1
767 by rmoretti
Wed, 2022-06-22 12:00
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,843 by rmoretti
Tue, 2019-12-10 13:10
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
2,531 by rmoretti
Mon, 2017-08-14 15:09
Normal topic GitHub authentication for Rosie
by ivmolle » Thu, 2023-01-19 00:21
1
580 by Sergey
Thu, 2023-01-19 13:33
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
2,867 by rmoretti
Sun, 2015-10-18 13:59
Normal topic Academic email
by ruuua » Wed, 2022-08-03 01:45
1
816 by Sergey
Thu, 2022-08-04 15:58
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
1,895 by rmoretti
Mon, 2019-06-24 12:30
Normal topic academic verification
by Rita Melo » Fri, 2023-05-26 07:36
1
422 by Sergey
Tue, 2023-05-30 11:31
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
946 by Sergey
Tue, 2022-03-15 11:28
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
1,969 by rmoretti
Wed, 2019-07-10 09:09
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