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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
28,291 by G-Jade
Fri, 2020-12-18 22:40
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
2,449 by rmoretti
Sun, 2015-10-18 13:59
Normal topic 502 Bad Gateway
by lijunnju » Fri, 2022-10-21 12:58
3
261 by Sergey
Mon, 2022-10-24 14:07
Normal topic 504 Gateway Time-out
by larae » Wed, 2022-08-31 03:38
2
217 by Sergey
Wed, 2022-08-31 09:12
Normal topic A table of residue-residue pair energies for residues which interact across the docking interface missing in output
by awaring » Mon, 2013-04-22 14:47
4
8,728 by smlewis
Mon, 2014-04-21 06:47
Normal topic Academic address
by almeida85 » Mon, 2022-09-26 07:25
2
181 by almeida85
Thu, 2022-09-29 00:10
Normal topic Academic address not verified during rosie login
by pomden31 » Thu, 2022-05-26 10:04
1
292 by Sergey
Thu, 2022-05-26 10:21
Normal topic Academic address not verified during rosie login
by s.shankar » Thu, 2022-07-14 09:40
2
306 by s.shankar
Fri, 2022-07-15 12:31
Normal topic Academic address not verified during Rosie login
by oscarpramos » Wed, 2022-10-19 00:31
2
281 by MpupoM
Wed, 2022-11-02 01:35
Normal topic Academic address not verified during Rosie login
by schacherl » Fri, 2022-10-07 02:06
1
246 by Sergey
Fri, 2022-10-07 15:28
Normal topic Academic address not verified during Rosie login
by Jean-Etienne » Thu, 2022-10-06 22:49
1
178 by Sergey
Fri, 2022-10-07 15:26
Normal topic Academic adress
by ErikRihtar » Sat, 2022-10-01 08:39
1
163 by Sergey
Mon, 2022-10-03 13:49
Normal topic Academic domain missing
by yoann.vial » Wed, 2022-04-13 00:20
2
407 by Sergey
Fri, 2022-04-15 10:20
Normal topic Academic domain not listed
by benjv » Wed, 2022-05-25 10:31
1
309 by Sergey
Thu, 2022-05-26 10:23
Normal topic Academic domain not listed
by larae » Mon, 2022-05-02 02:50
4
607 by SKlab
Mon, 2022-05-16 09:12
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
284 by Sergey
Fri, 2022-05-20 12:14
Normal topic Academic domains list
by aozalevsky » Tue, 2022-05-24 09:24
1
298 by rmoretti
Wed, 2022-05-25 08:25
Normal topic Academic E-mail address
by Valery Veresov » Wed, 2022-10-05 05:43
1
186 by rmoretti
Thu, 2022-10-06 09:18
Normal topic Academic email
by ruuua » Wed, 2022-08-03 01:45
1
294 by Sergey
Thu, 2022-08-04 15:58
Normal topic Academic email
by Timothius » Sun, 2022-07-24 15:51
1
264 by Sergey
Thu, 2022-07-28 14:28
Normal topic academic email
by rhn » Wed, 2022-08-17 12:44
1
196 by Sergey
Thu, 2022-08-18 13:34
Normal topic Academic email
by Morteza Ghandadi » Sun, 2022-07-17 00:36
1
240 by rmoretti
Mon, 2022-07-18 06:59
Normal topic Academic Email
by Teo » Tue, 2022-09-06 08:42
1
183 by Sergey
Tue, 2022-09-06 11:10
Normal topic Academic Email Address
by cecii_xy » Tue, 2022-11-08 07:31
1
237 by Sergey
Tue, 2022-11-08 12:34
Normal topic Academic email address verification
by bozturk » Wed, 2022-11-02 06:01
2
251 by bozturk
Thu, 2022-11-03 00:14
Normal topic Academic Email Adress
by Konstantin » Sat, 2022-11-12 02:06
1
226 by rmoretti
Mon, 2022-11-14 07:21
Normal topic Academic email adress
by StephanieAgu » Mon, 2022-11-14 23:54
2
254 by StephanieAgu
Wed, 2022-11-16 05:19
Normal topic academic institution domain is not listed
by minzhi » Mon, 2022-05-16 14:26
1
317 by Sergey
Wed, 2022-05-18 14:05
Normal topic academic institution domain is not listed
by ruma99 » Tue, 2022-05-24 08:33
1
306 by Sergey
Tue, 2022-05-24 10:45
Normal topic academic_address
by Natalia » Fri, 2022-09-16 12:27
1
162 by rmoretti
Fri, 2022-09-16 13:50
Normal topic account does not have verified academic email address
by haria256 » Sat, 2022-07-02 03:33
0
202 by haria256
Sat, 2022-07-02 03:33
Normal topic Antibody job failed
by larae » Fri, 2022-03-25 11:04
1
347 by rmoretti
Tue, 2022-03-29 15:14
Normal topic Antibody Job Failed
by aquilesms89 » Thu, 2020-08-13 08:50
0
1,111 by aquilesms89
Thu, 2020-08-13 08:50
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
1,485 by rmoretti
Wed, 2019-07-10 09:09
Normal topic Antibody prediction with ROSIE failed
by Sunyp_IM » Wed, 2017-08-02 23:45
4
3,537 by Sergey
Thu, 2019-05-09 08:15
Normal topic Antibody scoring
by larae » Wed, 2022-06-22 11:14
1
260 by rmoretti
Wed, 2022-06-22 12:00
Normal topic Antibody Server is down
by Jogi » Thu, 2012-06-21 04:50
2
4,964 by Sergey
Mon, 2014-04-21 06:47
Normal topic antibody-antigen interface score
by jessye » Sun, 2018-07-01 21:12
0
1,273 by jessye
Sun, 2018-07-01 21:12
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
1
6,525 by jaw315
Thu, 2022-06-09 10:26
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
1,397 by rmoretti
Thu, 2019-05-09 13:38
Normal topic Can you change background color of pdb file pictures?
by AdoCbl » Sun, 2015-08-09 01:47
3
4,488 by AdoCbl
Tue, 2015-08-18 19:17
Normal topic Cancel / delete Rosie not working
by fglaser » Tue, 2015-07-07 01:14
0
1,624 by fglaser
Tue, 2015-07-07 01:14
Normal topic Cannot confirm registration to the Rosie site
by fglaser » Sun, 2013-10-13 02:52
1
9,369 by Sergey
Mon, 2014-04-21 06:48
Normal topic Cannot login ROSIE-2 (docking-3)
by Pdk089 » Mon, 2022-04-25 11:30
1
339 by Sergey
Mon, 2022-04-25 11:48
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
3,065 by nmarze
Wed, 2016-05-25 14:54
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
2,132 by nmarze
Mon, 2016-08-22 11:57
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,304 by rmoretti
Tue, 2019-12-10 13:10
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
2,052 by rmoretti
Fri, 2017-12-01 11:21
Normal topic Correctly Formatting a PDB file for analysis of a Zinc Finger Motif
by rslack » Thu, 2022-04-28 18:19
0
222 by rslack
Thu, 2022-04-28 18:38
Normal topic ddG_RNA final energy different when modeling WT sequence
by AlexLukasiewicz » Tue, 2022-01-25 14:41
1
415 by Ajlukasiewicz
Fri, 2022-09-09 12:24
Normal topic Deleting ones "own" guest job a to reduce server load
by Protein fan » Thu, 2017-10-26 01:26
1
1,971 by rmoretti
Fri, 2017-12-01 11:24
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
1,451 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,375 by rmoretti
Fri, 2016-04-29 09:27
Normal topic Docking-Error 500
by edebenedictis » Wed, 2016-08-03 12:34
2
2,974 by Sergey
Wed, 2016-08-03 14:21
Normal topic docking2 results seem to not have contacting residues
by wagnerek » Tue, 2015-10-27 10:30
4
5,265 by AdoCbl
Sun, 2015-11-15 08:10
Normal topic docking2: local_docking vs docking_local_refine
by AdoCbl » Sat, 2015-08-08 23:57
3
4,616 by AdoCbl
Wed, 2015-08-26 19:44
Normal topic Docking2: Mismatch between score file and graph
by Ashafix » Sat, 2014-11-29 07:44
2
3,646 by AdoCbl
Sun, 2015-08-09 14:37
Normal topic docking2: will the real prepacked PDB stand up?
by David Weis » Tue, 2017-02-21 10:04
3
3,288 by rmoretti
Tue, 2017-02-28 08:34
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
1,940 by MIke Kent
Thu, 2019-03-28 11:26
Normal topic download decoy structures as .tar file?
by deplazes » Fri, 2014-11-21 19:25
1
3,064 by Ashafix
Sat, 2014-11-29 07:00
Normal topic Erraser protocol now open to public
by Sergey » Wed, 2012-10-17 12:38
0
2,007 by Sergey
Mon, 2014-04-21 06:47
Normal topic Erraser single-residue protocol now open to public
by Sergey » Thu, 2012-10-25 18:21
0
1,979 by Sergey
Mon, 2014-04-21 06:47
Normal topic Error 500 Docking protein
by Sherpaman » Tue, 2014-05-27 01:32
2
3,579 by Sergey
Wed, 2014-05-28 13:16
Normal topic Error Fasta file
by gabrielab » Mon, 2022-08-15 00:41
3
345 by Sergey
Mon, 2022-08-29 12:43
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
1,401 by rmoretti
Mon, 2019-06-24 12:30
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,363 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Failure in local docking
by Fei » Thu, 2014-06-26 12:24
1
2,808 by rmoretti
Tue, 2014-07-01 09:44
Normal topic FARFAR2 - Extra Minimize Hangs on Submittal
by jvogt » Thu, 2022-06-16 09:41
0
199 by jvogt
Thu, 2022-06-16 09:41
Normal topic FARFAR2 error
by lijunnju » Tue, 2020-02-11 08:09
4
2,091 by pomden31
Tue, 2022-10-04 00:37
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
585 by everyday847
Fri, 2021-10-08 10:29
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
1,548 by everyday847
Mon, 2019-11-11 14:39
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
3,567 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
3,468 by rmoretti
Fri, 2015-07-03 11:56
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
3,248 by rmoretti
Thu, 2017-07-13 15:19
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
809 by hajar
Fri, 2020-07-24 16:24
Normal topic how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine
by jai_INMAS » Thu, 2014-08-07 01:49
6
9,768 by jai_INMAS
Fri, 2014-08-15 08:02
Normal topic How to change your ROSIE username or password?
by AdoCbl » Sun, 2015-08-09 00:08
2
3,545 by AdoCbl
Tue, 2015-08-18 19:09
Normal topic How to improve ROSIE docking2 results?
by AdoCbl » Sun, 2015-08-09 01:22
2
3,601 by AdoCbl
Tue, 2015-08-18 19:19
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
2,405 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
1,061 by jessye
Thu, 2019-10-10 03:36
Normal topic Job 「№15623」has failed
by fglaser » Tue, 2015-07-07 00:17
3
4,919 by rmoretti
Tue, 2015-07-14 14:35
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
2,424 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE
by gabeliluo1 » Wed, 2016-01-06 16:23
5
6,015 by rmoretti
Thu, 2016-02-04 07:39
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
1,031 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol
by iphan » Mon, 2016-09-12 10:58
4
5,072 by rmoretti
Mon, 2016-10-03 10:44
Normal topic Ligand Docking Protocol now available for academic users
by Sergey » Sat, 2014-05-10 14:39
0
2,095 by Sergey
Sat, 2014-05-10 14:39
Normal topic Ligand docking score.sc file containing more structures than produced
by Delfosse57 » Sat, 2022-07-16 10:44
2
318 by Delfosse57
Mon, 2022-07-18 11:09
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
2,357 by gabr
Tue, 2019-11-19 13:57
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
400 by Sergey
Tue, 2022-03-15 11:28
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
4,006 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
2,086 by rmoretti
Mon, 2017-08-14 15:09
Normal topic Multiple antibody jobs failed
by larae » Mon, 2022-09-12 09:54
0
133 by larae
Mon, 2022-09-12 09:54
Normal topic My academic institution domain is not listed.
by mebigi » Fri, 2022-04-08 07:44
2
432 by mebigi
Mon, 2022-04-11 16:35
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
1,179 by Atirah
Fri, 2020-04-10 02:57
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
1,541 by rmoretti
Mon, 2019-06-24 12:02
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
3,544 by rmoretti
Thu, 2017-06-29 07:58
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
3,250 by Conan
Sat, 2015-04-25 11:31
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
3,604 by Sergey
Mon, 2016-11-14 14:48
Normal topic pKa app is now public!
by Sergey » Mon, 2014-03-10 15:47
0
3,494 by Sergey
Mon, 2014-03-10 15:47
Normal topic pKa job submitting problem
by syoifczeri » Tue, 2015-02-17 21:41
2
3,439 by syoifczeri
Wed, 2015-02-18 19:15
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