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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
5
24,722 by beslínail@gmail.com
Tue, 2020-02-18 08:12
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
111 by hajar
Fri, 2020-07-24 16:24
Normal topic Antibody Job Failed
by aquilesms89 » Thu, 2020-08-13 08:50
0
141 by aquilesms89
Thu, 2020-08-13 08:50
Normal topic ROSIE pKa calculation issue
by lijum » Mon, 2020-06-15 12:12
0
200 by lijum
Mon, 2020-06-15 12:12
Normal topic Questions about SnugDock result analysis
by LTJ » Thu, 2020-07-02 17:41
0
224 by LTJ
Thu, 2020-07-02 17:41
Normal topic ROSETTA design affinity optimization
by wentlewi » Mon, 2020-02-03 01:42
0
359 by wentlewi
Mon, 2020-02-03 01:42
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
407 by jessye
Thu, 2019-10-10 03:36
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
419 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
423 by rmoretti
Tue, 2019-12-10 13:10
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
445 by rmoretti
Mon, 2019-06-24 12:20
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
451 by rmoretti
Tue, 2019-07-09 09:49
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
459 by Atirah
Fri, 2020-04-10 02:57
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
466 by rmoretti
Mon, 2019-06-24 12:30
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
485 by rmoretti
Mon, 2019-06-24 12:02
Normal topic problem in downloading result from backrub server
by ladimafakher » Sun, 2018-07-01 00:50
0
487 by ladimafakher
Sun, 2018-07-01 00:50
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
488 by rmoretti
Wed, 2019-07-10 09:09
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
491 by rmoretti
Thu, 2019-05-09 13:38
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
507 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
526 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
568 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
587 by everyday847
Mon, 2019-11-11 14:39
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
621 by gabr
Tue, 2019-11-19 13:57
Normal topic FARFAR2 error
by lijunnju » Tue, 2020-02-11 08:09
2
628 by Lipgloss
Mon, 2020-04-20 01:56
Normal topic antibody-antigen interface score
by jessye » Sun, 2018-07-01 21:12
0
678 by jessye
Sun, 2018-07-01 21:12
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
713 by MIke Kent
Thu, 2019-03-28 11:26
Normal topic SNUGDOCK
by harsh » Tue, 2018-10-09 23:58
1
752 by Sergey
Tue, 2018-10-16 15:52
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
766 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic Snugdock
by MIke Kent » Mon, 2019-12-16 22:10
4
834 by MIke Kent
Tue, 2019-12-24 08:02
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
866 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
913 by smlewis
Thu, 2018-05-03 11:45
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
954 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
1,027 by ssrb
Fri, 2017-07-21 09:29
Normal topic Transitioning from ROSIE to Rosetta
by AdoCbl » Wed, 2015-09-23 11:49
0
1,051 by AdoCbl
Wed, 2015-09-23 11:49
Normal topic Ways to improve ROSIE docking2 jobs
by AdoCbl » Wed, 2015-09-23 15:12
0
1,068 by AdoCbl
Wed, 2015-09-23 15:12
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
1,076 by rmoretti
Fri, 2017-12-01 11:21
Normal topic Problem with ROSIE antibody modeling
by wildchipiron » Thu, 2016-04-14 20:00
0
1,078 by wildchipiron
Thu, 2016-04-14 20:00
Normal topic Ways to improve both docking2 and symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 14:43
0
1,086 by AdoCbl
Wed, 2015-09-23 15:35
Normal topic Deleting ones "own" guest job a to reduce server load
by Protein fan » Thu, 2017-10-26 01:26
1
1,088 by rmoretti
Fri, 2017-12-01 11:24
Normal topic Cancel / delete Rosie not working
by fglaser » Tue, 2015-07-07 01:14
0
1,103 by fglaser
Tue, 2015-07-07 01:14
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
1,118 by rmoretti
Mon, 2017-08-14 15:09
Normal topic Rosie server stuck??
by David Weis » Sun, 2017-03-05 13:37
1
1,167 by smlewis
Mon, 2017-03-06 08:58
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
1,187 by Loki01
Mon, 2018-03-19 13:45
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
1,265 by nmarze
Mon, 2016-08-22 11:57
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
1,291 by Sergey
Fri, 2016-04-22 11:13
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
1,293 by rmoretti
Thu, 2017-02-23 13:03
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
1,373 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
1,416 by smlewis
Sun, 2016-08-28 12:04
Normal topic Erraser protocol now open to public
by Sergey » Wed, 2012-10-17 12:38
0
1,520 by Sergey
Mon, 2014-04-21 06:47
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
1,523 by rmoretti
Fri, 2016-04-29 09:27
Normal topic Erraser single-residue protocol now open to public
by Sergey » Thu, 2012-10-25 18:21
0
1,525 by Sergey
Mon, 2014-04-21 06:47
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
1,569 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic Ligand Docking Protocol now available for academic users
by Sergey » Sat, 2014-05-10 14:39
0
1,573 by Sergey
Sat, 2014-05-10 14:39
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
1,586 by rmoretti
Sun, 2015-10-18 13:59
Normal topic ROSIE antibody modeling- discontinuity in backbone
by wagnerek » Tue, 2015-10-27 10:18
1
1,590 by rmoretti
Wed, 2015-11-25 12:53
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
1,613 by IAndre
Mon, 2015-10-19 01:19
Normal topic Antibody prediction with ROSIE failed
by Sunyp_IM » Wed, 2017-08-02 23:45
4
1,676 by Sergey
Thu, 2019-05-09 08:15
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
1,697 by rmoretti
Thu, 2017-07-13 15:19
Normal topic Docking-Error 500
by edebenedictis » Wed, 2016-08-03 12:34
2
1,810 by Sergey
Wed, 2016-08-03 14:21
Normal topic docking2: will the real prepacked PDB stand up?
by David Weis » Tue, 2017-02-21 10:04
3
1,848 by rmoretti
Tue, 2017-02-28 08:34
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
1,866 by rmoretti
Thu, 2017-06-29 07:58
Normal topic supercharge problems
by hooria » Tue, 2016-06-14 05:29
2
1,925 by smlewis
Wed, 2016-06-15 07:50
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
1,937 by nmarze
Wed, 2016-05-25 14:54
Normal topic Regarding snugdock Ag-Ab score
by ss » Mon, 2018-12-10 14:47
7
1,971 by ss
Thu, 2019-01-03 09:08
Normal topic Prepack step fail in docking2
by gretahultqvist » Thu, 2015-06-11 00:20
1
2,001 by rmoretti
Fri, 2015-07-03 12:14
Normal topic Failure in local docking
by Fei » Thu, 2014-06-26 12:24
1
2,004 by rmoretti
Tue, 2014-07-01 09:44
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
2,158 by Sergey
Mon, 2016-11-14 14:48
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
2,158 by rmoretti
Fri, 2015-07-03 11:56
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
2,175 by Conan
Sat, 2015-04-25 11:31
Normal topic download decoy structures as .tar file?
by deplazes » Fri, 2014-11-21 19:25
1
2,212 by Ashafix
Sat, 2014-11-29 07:00
Normal topic problems with docking
by msironi » Thu, 2016-10-27 00:46
3
2,228 by Sergey
Mon, 2016-11-21 11:03
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
2,280 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic pKa job submitting problem
by syoifczeri » Tue, 2015-02-17 21:41
2
2,341 by syoifczeri
Wed, 2015-02-18 19:15
Normal topic How to change your ROSIE username or password?
by AdoCbl » Sun, 2015-08-09 00:08
2
2,366 by AdoCbl
Tue, 2015-08-18 19:09
Normal topic How to improve ROSIE docking2 results?
by AdoCbl » Sun, 2015-08-09 01:22
2
2,423 by AdoCbl
Tue, 2015-08-18 19:19
Normal topic Problems with the RNA Denovo server
by mariaclausen » Tue, 2014-11-25 01:45
2
2,446 by mariaclausen
Thu, 2014-11-27 01:30
Normal topic Docking2: Mismatch between score file and graph
by Ashafix » Sat, 2014-11-29 07:44
2
2,485 by AdoCbl
Sun, 2015-08-09 14:37
Normal topic Error 500 Docking protein
by Sherpaman » Tue, 2014-05-27 01:32
2
2,541 by Sergey
Wed, 2014-05-28 13:16
Normal topic Supercharge server
by alva » Wed, 2014-07-02 17:36
2
2,660 by hooria
Mon, 2016-06-13 11:08
Normal topic Can you change background color of pdb file pictures?
by AdoCbl » Sun, 2015-08-09 01:47
3
2,969 by AdoCbl
Tue, 2015-08-18 19:17
Normal topic pKa app is now public!
by Sergey » Mon, 2014-03-10 15:47
0
3,009 by Sergey
Mon, 2014-03-10 15:47
Normal topic docking2: local_docking vs docking_local_refine
by AdoCbl » Sat, 2015-08-08 23:57
3
3,114 by AdoCbl
Wed, 2015-08-26 19:44
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
3,149 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic Sequence Tolerance Failed
by Dstork » Tue, 2017-01-03 07:13
6
3,190 by Sergey
Mon, 2017-01-09 16:37
Normal topic Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol
by iphan » Mon, 2016-09-12 10:58
4
3,235 by rmoretti
Mon, 2016-10-03 10:44
Normal topic Job 「№15623」has failed
by fglaser » Tue, 2015-07-07 00:17
3
3,330 by rmoretti
Tue, 2015-07-14 14:35
Normal topic docking2 results seem to not have contacting residues
by wagnerek » Tue, 2015-10-27 10:30
4
3,415 by AdoCbl
Sun, 2015-11-15 08:10
Normal topic Ways to improve ROSIE symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 13:39
4
3,653 by IAndre
Tue, 2015-09-29 08:10
Normal topic Antibody Server is down
by Jogi » Thu, 2012-06-21 04:50
2
3,848 by Sergey
Mon, 2014-04-21 06:47
Normal topic LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE
by gabeliluo1 » Wed, 2016-01-06 16:23
5
4,043 by rmoretti
Thu, 2016-02-04 07:39
Normal topic RMSD values in docking2 and symmetric_docking runs
by AdoCbl » Sun, 2015-08-09 00:48
4
4,221 by rmoretti
Fri, 2015-09-04 13:57
Normal topic Symmetric Docking Jobs not running
by Flaviyan » Wed, 2014-02-05 06:41
2
4,528 by AdoCbl
Sat, 2015-08-08 22:38
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
0
4,565 by Sergey
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking Protocol
by Sergey » Tue, 2013-10-29 17:33
0
4,866 by Sergey
Mon, 2014-04-21 06:48
Normal topic Rosie Server Docking2, wrong plots output?
by Conan » Tue, 2015-04-21 12:18
6
5,210 by AdoCbl
Sun, 2015-08-09 14:38
Normal topic how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine
by jai_INMAS » Thu, 2014-08-07 01:49
6
6,969 by jai_INMAS
Fri, 2014-08-15 08:02
Normal topic A table of residue-residue pair energies for residues which interact across the docking interface missing in output
by awaring » Mon, 2013-04-22 14:47
4
7,050 by smlewis
Mon, 2014-04-21 06:47
Normal topic Score and I_sc in ROSIE symmetric_docking output
by AdoCbl » Sun, 2015-08-09 00:26
11
8,072 by rmoretti
Tue, 2015-11-24 16:33
Normal topic Cannot confirm registration to the Rosie site
by fglaser » Sun, 2013-10-13 02:52
1
8,519 by Sergey
Mon, 2014-04-21 06:48
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