Rosetta 3.3
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
utility::pointer::access_ptr< T >Non-owning access smart pointer
yaml::events::AliasEvent
yaml::tokens::AliasToken
AnchorFinderMoverAnchorFinder mover
yaml::tokens::AnchorToken
utility::options::AnyOption< T >Program any scalar-valued option abstract base class
utility::options::AnyOptionKeyAutomatic hidden index key for any scalar-valued options
utility::options::AnyVectorOption< T >Program any vector-valued option abstract base class
utility::options::AnyVectorOptionKeyAutomatic hidden index key for any vector-valued options
APDBCMoverAPDBC mover
rosetta_py::io::mdl_molfile::Atom
rosetta_py::io::pdb::Atom
AtomXYZ
utility::keys::AutoKey< O, S, C >Automatic hidden index key abstract base class
yaml::constructor::BaseConstructor
yaml::dumper::BaseDumper
yaml::loader::BaseLoader
yaml::representer::BaseRepresenter
yaml::resolver::BaseResolver
BaseWrap
utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT >A mpiper ostream
utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >Base class for mpi ostreams
utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >A stream decorator that takes raw input and zips it to a ostream
basic::basic_otstream< CharT, Traits >Base class for Tracer, TracerProxy and UTracer objects
basic_streambuf
basic_stringbuf
basic::basic_otstream< CharT, Traits >::basic_tstringbuf< _CharT, _Traits >Wrapper class for std::stringbuf
zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >A stream decorator that takes compressed input and unzips it to a istream
zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >A zipper istream
zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT >Base class for unzip istreams
zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >A zipper ostream
zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >Base class for zip ostreams
zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >A stream decorator that takes raw input and zips it to a ostream
basic::datacache::BasicDataCacheA DataCache storing objects derived from basic::datacache::CacheableData
utility::keys::lookup::begin< K >Key lookup begin iterator functor
Benchmark
numeric::interpolation::spline::BicubicSpline
ObjexxFCL::fmt::Bite< T >
utility::BitSet< B >Simple bit set
utility::BitVector< B >Simple bit vector
yaml::tokens::BlockEndToken
yaml::tokens::BlockEntryToken
yaml::tokens::BlockMappingStartToken
yaml::tokens::BlockSequenceStartToken
numeric::BodyPosition< T >Rigid body 3-D position/transform
rosetta_py::io::mdl_molfile::Bond
utility::options::BooleanOptionProgram boolean option class
utility::options::BooleanOptionKeyAutomatic hidden index key for boolean options
utility::options::BooleanVectorOptionProgram boolean vector option class
utility::options::BooleanVectorOptionKeyAutomatic hidden index key for boolean options
utility::Bound< T >Bound value class
numeric::geometry::BoundingBox< T >3d axis aligned bounding box class
utility::signals::BufferedSignalHub< ReturnType, Signal >SignalHub capable of buffering while blocking
ObjexxFCL::byteByte: One-Byte Integer
basic::datacache::CacheableDataBase class for data storable within a DataCache
basic::datacache::CacheableStringWrapper for std::string
basic::datacache::CacheableStringFloatMapWrapper for std::map< std::string, float >
basic::datacache::CacheableStringMapWrapper for a map< string, string >
ObjexxFCL::CArray< T >CArray: Memory-Managed C Array Wrapper
ObjexxFCL::CArrayP< T >CArrayP: Memory-Managed C Array Wrapper Supporting Proxies
yaml::cyaml::CBaseDumper
yaml::cyaml::CBaseLoader
tools::CppParser::CD
yaml::cyaml::CDumper
CEmitter
ObjexxFCL::Chunk< T >Chunk: Contiguous Array for Use in ChunkVector
ObjexxFCL::ChunkExponentChunkExponent: ChunkVector Exponent Wrapper for Function Disambiguation and Range Clipping
ObjexxFCL::ChunkVector< T >ChunkVector: Chunk-Contiguous Vector for Fast Very Large Vectors
tools::CppParser::ClangXML
utility::keys::ClassKeyMap< K, T, C >Keyed-access map with key subset map for each client class
utility::keys::ClassKeyVector< K, T, C >Keyed-access vector with key subset map for each client class
yaml::constructor::Constructor::classobj
yaml::cyaml::CLoader
numeric::ClusteringTreeNode
yaml::events::CollectionEndEvent
yaml::nodes::CollectionNode
yaml::events::CollectionStartEvent
numeric::ColPointers< T >
numeric::ColsPointer< T >
numeric::ColVectors< T >
numeric::interpolation::spline::compare_interp_range
numeric::kdtree::CompareKDPoints
basic::ComparingTracer
yaml::composer::Composer
yaml::composer::ComposerError
numeric::interpolation::spline::CompoundInterpolator
yaml::constructor::Constructor
yaml::constructor::ConstructorError
ContextIndependentOneBodyEnergy
utility::query::Converter< T, N >
utility::query::Converter1Param< T, A, N >
tools::CppParser::CppClass
tools::CppParser::CppEnum
tools::CppParser::CppFunction
tools::CppParser::CppNamespace
tools::CppParser::CppType
tools::CppParser::CppType_Complex
tools::CppParser::CppType_Composite
tools::CppParser::CppType_Fundamental
tools::CppParser::CppType_Simple
tools::CppParser::CppType_Typedef
tools::CppParser::CppVariable
yaml::cyaml::CSafeDumper
yaml::cyaml::CSafeLoader
ObjexxFCL::CstringCstring: C String Wrapper
numeric::interpolation::spline::CubicSpline
utility::sql_database::DatabaseSessionManager
basic::datacache::DataCache< Data >Indexed storage for objects derived from a ReferenceCountable data type
basic::datacache::DataCache_CacheableData
DemoBase
DemoDerived
utility::DereferenceIterator< Container >Const_iterator class for SilentFileData container
DesignBenchmark
basic::datacache::DiagnosticDataWrapper for std::map<string, Real>
ObjexxFCL::DimensionDimension: Dynamic Dimension
ObjexxFCL::DimensionExpressionDimensionExpression: DimensionExpression Interface Class
ObjexxFCL::DimensionExpressionConDimensionExpressionCon: Constant-Valued DimensionExpression
ObjexxFCL::DimensionExpressionCubeDimensionExpressionCube: DimensionExpression Cube Function
ObjexxFCL::DimensionExpressionDivDimensionExpressionDiv: DimensionExpression Binary Division
ObjexxFCL::DimensionExpressionMaxDimensionExpressionMax: DimensionExpression Binary Max Function
ObjexxFCL::DimensionExpressionMinDimensionExpressionMin: DimensionExpression Binary Min Function
ObjexxFCL::DimensionExpressionMulDimensionExpressionMul: DimensionExpression Binary Product
ObjexxFCL::DimensionExpressionPowDimensionExpressionPow: DimensionExpression Power Function: expression1^expression2
ObjexxFCL::DimensionExpressionRefDimensionExpressionRef: Dimension Reference DimensionExpression
ObjexxFCL::DimensionExpressionSquareDimensionExpressionSquare: DimensionExpression Square Function
ObjexxFCL::DimensionExpressionSubDimensionExpressionSub: DimensionExpression Binary Subtraction
ObjexxFCL::DimensionExpressionSumDimensionExpressionSum: DimensionExpression Binary Sum
yaml::tokens::DirectiveToken
DockingBenchmark< dock, TScale >
arls_impl::DockingCase
arls_impl::DockingFile
yaml::events::DocumentEndEvent
yaml::tokens::DocumentEndToken
yaml::events::DocumentStartEvent
yaml::tokens::DocumentStartToken
tools::dox_extract::dox_extract
tools::DoxygenExtractorPyPP::doxygen_doc_extractor
DummyMoverThis "DummyMover" is employed simply to prevent NULL pointer exceptions in case internal classes try to call Mover methods without checking for pointer validity. The JobDistributor/DockDesignParser will/should reassign this pointer to a real Mover
yaml::dumper::Dumper
ObjexxFCL::DynamicIndexRangeDynamicIndexRange: Dynamic Index Range
basic::EmitterLightweight class to ease writting YAML documents (http://yaml.org)
yaml::emitter::Emitter
yaml::emitter::EmitterError
parallel::Empty
utility::keys::lookup::end< K >Key lookup end iterator functor
EnergyMethodCreator
yaml::events::Event
Exception
utility::excn::EXCN_BadInput
utility::excn::EXCN_Base
utility::excn::EXCN_Exception
utility::excn::EXCN_FileNotFound
utility::excn::EXCN_IO
utility::excn::EXCN_Msg_Exception
utility::excn::EXCN_NullPointer
utility::excn::EXCN_RangeError
utility::EXCN_utility_exit
utility::factory::Factory< P >Pluggable factory
ObjexxFCL::FArray< T >FArray: Fortran-Compatible Array Hierarchy Abstract Base Class
ObjexxFCL::FArray1< T >FArray1: Fortran-Compatible 1D Array Abstract Base Class
ObjexxFCL::FArray1A< T >FArray1A: Fortran-Compatible 1D Argument Array
ObjexxFCL::FArray1D< T >FArray1D: Fortran-Compatible 1D Array
ObjexxFCL::FArray1P< T >FArray1P: Fortran-Compatible 1D Proxy Array
ObjexxFCL::FArray2< T >FArray2: Fortran-Compatible 2D Array Abstract Base Class
ObjexxFCL::FArray2A< T >FArray2A: Fortran-Compatible 2D Argument Array
ObjexxFCL::FArray2D< T >FArray2D: Fortran-Compatible 2D Array
ObjexxFCL::FArray2P< T >FArray2P: Fortran-Compatible 2D Proxy Array
ObjexxFCL::FArray3< T >FArray3: Fortran-Compatible 3D Array Abstract Base Class
ObjexxFCL::FArray3A< T >FArray3A: Fortran-Compatible 3D Argument Array
ObjexxFCL::FArray3D< T >FArray3D: Fortran-Compatible 3D Array
ObjexxFCL::FArray3P< T >FArray3P: Fortran-Compatible 3D Proxy Array
ObjexxFCL::FArray4< T >FArray4: Fortran-Compatible 4D Array Abstract Base Class
ObjexxFCL::FArray4A< T >FArray4A: Fortran-Compatible 4D Argument Array
ObjexxFCL::FArray4D< T >FArray4D: Fortran-Compatible 4D Array
ObjexxFCL::FArray4P< T >FArray4P: Fortran-Compatible 4D Proxy Array
ObjexxFCL::FArray5< T >FArray5: Fortran-Compatible 5D Array Abstract Base Class
ObjexxFCL::FArray5A< T >FArray5A: Fortran-Compatible 5D Argument Array
ObjexxFCL::FArray5D< T >FArray5D: Fortran-Compatible 5D Array
ObjexxFCL::FArray5P< T >FArray5P: Fortran-Compatible 5D Proxy Array
ObjexxFCL::FArray6< T >FArray6: Fortran-Compatible 6D Array Abstract Base Class
ObjexxFCL::FArray6A< T >FArray6A: Fortran-Compatible 5D Argument Array
ObjexxFCL::FArray6D< T >FArray6D: Fortran-Compatible 5D Array
ObjexxFCL::FArray6P< T >FArray6P: Fortran-Compatible 5D Proxy Array
ObjexxFCL::FArrayInitializer< T, Array >FArrayInitializer: FArray Initializer Class Template
ObjexxFCL::FArraySection< T >FArraySection: Fortran-Compatible Array Section Proxy
ObjexxFCL::FArrayTraits< T >FArrayTraits: FArray Traits Template
ObjexxFCL::FastRemainderSelector< T, bool >Fast remainder function selector class for non-integer types
numeric::FastRemainderSelector< T, bool >Fast remainder function selector class for non-integer types
ObjexxFCL::FastRemainderSelector< T, true >Fast remainder function selector class for integer types
numeric::FastRemainderSelector< T, true >Fast remainder function selector class for integer types
FastThreadingMover
utility::file::FileNameFile name class supporting Windows and UN*X/Linux format names
utility::options::FileOptionProgram file option class
utility::options::FileOptionKeyAutomatic hidden index key for file options
utility::options::FileVectorOptionProgram file vector option class
utility::options::FileVectorOptionKeyAutomatic hidden index key for file options
utility::query::Filter< T >
utility::query::Filter0Param< T >
utility::query::Filter1Param< T, A >
utility::query::Filter1ParamGenerator< T, A >
utility::query::Filter_And< T >
utility::query::Filter_Not< T >
utility::query::Filter_Or< T >
utility::query::FilterBase< T >
utility::fixedsizearray1< T, S >
utility::fixedsizearray1const_iterator< T, S >
utility::fixedsizearray1iterator< T, S >
utility::FixedSizeLexicographicalIterator< S >
FloppyTailMoverFloppyTail mover
yaml::tokens::FlowEntryToken
yaml::tokens::FlowMappingEndToken
yaml::tokens::FlowMappingStartToken
yaml::tokens::FlowSequenceEndToken
yaml::tokens::FlowSequenceStartToken
rosetta_py::utility::ForkManager::ForkManager
ObjexxFCL::FstringFstring: Fixed-Length Fortran-Compatible String
ObjexxFCL::FsubstringFsubstring: Fixed-Length Fortran-Compatible Substring
parallel::Full
tools::CppParser::GccXML
utility::keys::lookup::gen< K >Key lookup/generator functor
utility::keys::lookup::has< K >Key lookup has query functor
utility::heap
numeric::interpolation::Histogram< X, Y >A histogram with fixed-width bins
numeric::interpolation::HistogramAP< X, Y >
numeric::interpolation::HistogramCAP< X, Y >
numeric::interpolation::HistogramCOP< X, Y >
numeric::interpolation::HistogramOP< X, Y >
numeric::HomogeneousTransform< T >
numeric::HomogeneousTransform_Double
numeric::kdtree::HyperRectangle
IAMover
utility::io::icstreamIcstream: Input channel stream wrapper class
utility::query::ImplicitConverter< T, N >
utility::in_place_list< T >
IndentedHelpFormatter
ObjexxFCL::IndexRangeIndexRange: Index Range Abstract Base Class
utility::IndirectSorter< DataContainerType, ComparatorType >Sorts a container of things indirectly
ObjexxFCL::internal::InitializerSentinelInitializerSentinel: FArray Constructor Initializer Sentinel Class
utility::Inline_File_Provider
utility::options::IntegerOptionProgram integer option class
utility::options::IntegerOptionKeyAutomatic hidden index key for integer options
utility::options::IntegerVectorOptionProgram integer vector option class
utility::options::IntegerVectorOptionKeyAutomatic hidden index key for integer options
numeric::interpolation::spline::interp_range
numeric::interpolation::spline::Interpolator
numeric::IntervalSet< T >
numeric::IntervalSet_Double
numeric::IOTraits< T >Numerics input/output type traits
numeric::IOTraits< double >Numerics input/output type traits double specialization
numeric::IOTraits< float >Numerics input/output type traits float Specialization
numeric::IOTraits< int >Numerics input/output type traits int specialization
numeric::IOTraits< long double >Numerics input/output type traits long double specialization
numeric::IOTraits< long int >: Numerics input/output type traits long int specialization
numeric::IOTraits< short int >Numerics input/output type traits short int specialization
numeric::IOTraits< unsigned int >: Numerics input/output type traits unsigned int specialization
numeric::IOTraits< unsigned long int >Numerics input/output type traits unsigned long int specialization
numeric::IOTraits< unsigned short int >: Numerics input/output type traits unsigned short int specialization
utility::io::irstreamOrstream: Input stream wrapper abstract base class
utility::signals::IsLinkUnitInvalid< Function >Struct useful as combined predicate + deallocation of function object contained inside a LinkUnit
utility::io::izstreamIzstream: Input file stream wrapper for uncompressed and compressed files
JDtestmoverLocal mover for testing purposes
basic::JsonEmitterLightweight class to ease writting JSON documents, a subset of YAML (http://json.org)
numeric::kdtree::KDNode
numeric::kdtree::KDPoint
numeric::kdtree::KDPoint_MinDist
numeric::kdtree::KDPointListClass for keeping track of the closest N KDPoint objects by distance
numeric::kdtree::KDTree
utility::keys::KeyHidden index key interface class
utility::keys::lookup::key< K >Key lookup key query functor
utility::keys::Key2Tuple< K1, K2 >2-tuple meta-key
utility::keys::Key2Vector< K >2-key meta-key
utility::keys::Key3Tuple< K1, K2, K3 >3-tuple meta-key
utility::keys::Key3Vector< K >3-key meta-key
utility::keys::Key4Tuple< K1, K2, K3, K4 >4-tuple meta-key
utility::keys::Key4Vector< K >4-key meta-key
utility::keys::KeyCountKey counter functor
ObjexxFCL::KeyFArray1D< T >KeyFArray1D: Key-Access Fortran-Compatible 1D Array
ObjexxFCL::KeyFArray2D< T >KeyFArray2D: Key-Access Fortran-Compatible 2D Array
ObjexxFCL::KeyFArray3D< T >KeyFArray3D: Key-Access Fortran-Compatible 3D Array
ObjexxFCL::KeyFArray4D< T >KeyFArray4D: Key-Access Fortran-Compatible 4D Array
ObjexxFCL::KeyFArray5D< T >KeyFArray5D: Key-Access Fortran-Compatible 5D Array
ObjexxFCL::KeyFArray6D< T >KeyFArray6D: Key-Access Fortran-Compatible 6D Array
utility::keys::KeyLess< T, U >Key member comparison functor template
utility::keys::KeyLookup< K >Key lookup map and collection
utility::keys::KeyMapTraits< K, T >KeyMap traits class
utility::keys::KeySetTraits< K >KeySet traits class
yaml::tokens::KeyToken
utility::keys::KeyVector< K, T >Keyed-access vector
utility::keys::KeyVectorTraits< K >KeyVector traits class
numeric::fourier::kiss_fft_state
numeric::fourier::kiss_fftnd_state
numeric::fourier::kiss_fftndr_state
numeric::fourier::kiss_fftr_state
utility::LexicographicalIterator
LigandBaseProtocol
LigandDockBenchmark
LigandDockScriptBenchmark
LigandRepackMinimizeProtocol
utility::signals::LinkInterface wrapper around utility::signals::LinkUnit
utility::signals::LinkUnitStruct specifying actual link data between observers and subjects
utility::list_element< T >
yaml::loader::Loader
yaml::events::MappingEndEvent
yaml::nodes::MappingNode
yaml::events::MappingStartEvent
yaml::error::Mark
yaml::error::MarkedYAMLError
numeric::MathMatrix< T >
numeric::MathVector< T >
basic::MemTracer
utility::query::Metric< T >
utility::query::Metric0Param< T >
utility::query::Metric1Param< T, A >
utility::query::Metric1ParamGenerator< T, A >
utility::query::Metric_Add< T >
utility::query::Metric_Div< T >
utility::query::Metric_Mult< T >
utility::query::Metric_Neg< T >
utility::query::Metric_Pow< T >
utility::query::Metric_Sub< T >
utility::query::MetricBase< T >
utility::query::MetricConstant< T >
utility::query::MetricInequality< T >
basic::MetricValue< T >
basic::MetricValueBase
MinimizerBenchmark< sft, TScale >
ObjexxFCL::ModSelector< T, bool >Mod function selector class for non-integer types
numeric::ModSelector< T, bool >Mod function selector class for non-integer types
ObjexxFCL::ModSelector< T, true >Mod function selector class for integer types
numeric::ModSelector< T, true >Mod function selector class for integer types
ObjexxFCL::ModuloSelector< T, bool >Modulo function selector class for non-integer types
numeric::ModuloSelector< T, bool >Modulo function selector class for non-integer types
numeric::ModuloSelector< T, true >Modulo function selector class for integer types
ObjexxFCL::ModuloSelector< T, true >Modulo function selector class for integer types
rosetta_py::io::mdl_molfile::Molfile
Mover
Mover
MRMover
numeric::random::mt19937_RG
numeric::MultiDimensionalHistogramClass for accumulating a histogram of one or more numeric variables
Mutate1RandomizerDifferent set of choices at each position in Entity's traits
test::T850_SubClassing::My_New_Mover
myMC
test::T850_SubClassing::MyNewCI1B
test::T850_SubClassing::MyNewCI1B_Creator
MyScoreMover
utility::keys::lookup::n_key< K >Key lookup n_key query functor
ObjexxFCL::NearestSelector< R, T, bool >Nearest function selector class for R non-integer or T integer
numeric::NearestSelector< R, T, bool >Nearest function selector class for R non-integer or T integer
ObjexxFCL::NearestSelector< R, T, true >Nearest function selector class for R integer and T non-integer
numeric::NearestSelector< R, T, true >Nearest function selector class for R integer and T non-integer
utility::keys::NoClientDefault key policy class when no client is needed to distinguish key type
yaml::nodes::Node
yaml::events::NodeEvent
numeric::NumericTraits< T >NumericTraits: Numeric type traits
numeric::NumericTraits< double >NumericTraits: Numeric type traits double specialization
numeric::NumericTraits< float >NumericTraits: Numeric type traits float specialization
numeric::NumericTraits< long double >NumericTraits: Numeric type traits long double specialization
object
ObjexxFCL::ObserverObserver: Combined Subject + Observer Abstract Base Class
ObjexxFCL::internal::ObserverGraphObserverGraph: Observer Graph Representation
ObjexxFCL::ObserverMultiObserverMulti: Combined Subject + Multi Observer Abstract Base Class
ObjexxFCL::ObserverSingleObserverSingle: Combined Subject + Single Observer Abstract Base Class
utility::io::ocstreamOcstream: Output channel stream wrapper class
numeric::histograms::OneDHistogram< key1 >
options_class::Option
utility::options::OptionProgram option interface class
utility::options::OptionCollectionProgram options collection
utility::options::OptionKeyAbstract automatic hidden index key for options
utility::OrderedTuple< T >The ordered tuple takes a container class T and defines comparison operators so that the tuple may be sorted
numeric::interpolation::spline::OrderPoint
utility::io::orstreamOrstream: Output stream wrapper base class
utility::pointer::owning_ptr< T >Shared-ownership intrusive reference-counted smart pointer
utility::io::ozstreamOzstream: Output file stream wrapper for uncompressed and compressed files
parallel::ParagraphHelpFormatter
yaml::parser::Parser
yaml::parser::ParserError
utility::file::PathNamePath name class supporting Windows and UN*X/Linux format names
utility::options::PathOptionProgram path option class
utility::options::PathOptionKeyAutomatic hidden index key for path options
utility::options::PathVectorOptionProgram path vector option class
utility::options::PathVectorOptionKeyAutomatic hidden index key for path options
utility::signals::PausableSignalHub< ReturnType, Signal >BufferedSignalHub capable of pausing and waiting for stdin
rosetta_py::io::pdb::PdbRecord
pep_coord_cst
utility::PeriodicSplineReaderClass: PeriodicSplineReader
numeric::interpolation::spline::Point
utility::keys::PointerKeyLess< T, U >Key member comparison functor template for pointers
PosePyObserver
PosePyObserver
PosePyObserver2
PositionSpecificRandomizer
PyMOLPyRosettaServer::PR_PyMOLServer
NetLink::PR_UDPServer
PyMOLPyRosettaServer::PR_UDPServer
molfile_to_params::PreformattedDescFormatter
basic::ProfileThis
ObjexxFCL::internal::ProxySentinelProxySentinel: FArray Constructor Proxy Sentinel Class
src::PyJobDistributor
src::PyMOL_Mover
src::PyMOL_Observer
PyMover
PyMover
src::PySocketClient
numeric::Quaternion< T >Unit quaternion 3-D orientation representation
parallel::Queue
numeric::random::RandomGeneratorRandom number generator system
utility::RawType< T >Meta-programming classes to provide the pointer type for down_cast
utility::RawType< T & >
utility::RawType< T * >
yaml::reader::Reader
yaml::reader::ReaderError
utility::options::RealOptionProgram real option class
utility::options::RealOptionKeyAutomatic hidden index key for real options
utility::options::RealVectorOptionProgram real vector option class
utility::options::RealVectorOptionKeyAutomatic hidden index key for real options
utility::pointer::ReferenceCountBase class for reference-counted polymorphic classes
utility::pointer::ReferenceCountMIInterface class for reference counted polymorphic classes
utility::pointer::ReferenceCountMI_Base class for reference counted polymorphic classes
tools::CppParser::ReferenceSection
utility::factory::Registrant< P >Factory registrant
ObjexxFCL::RemainderSelector< T, bool >Remainder function selector class for non-integer types
numeric::RemainderSelector< T, bool >Remainder function selector class for non-integer types
ObjexxFCL::RemainderSelector< T, true >Remainder function selector class for integer types
numeric::RemainderSelector< T, true >Remainder function selector class for integer types
yaml::representer::Representer
yaml::representer::RepresenterError
numeric::random::ReservoirSampler< T >Simple container for keeping K random values
yaml::resolver::Resolver
yaml::resolver::ResolverError
rmsd_score_pymol_plotter::RMSD_score_plotter
numeric::model_quality::RmsDataRmsData is a class intended to replace the global rms_obj namespace from rosetta++. Initial implementation is with a singleton design pattern to mimic a global namespace from rosetta++
numeric::RowPointers< T >
numeric::RowsPointer< T >
numeric::RowVectors< T >
S
yaml::constructor::SafeConstructor
yaml::dumper::SafeDumper
yaml::loader::SafeLoader
yaml::representer::SafeRepresenter
yaml::emitter::ScalarAnalysis
yaml::events::ScalarEvent
yaml::nodes::ScalarNode
utility::options::ScalarOptionProgram scalar-valued option interface class
utility::options::ScalarOption_T_< K, T >Program scalar-valued option abstract base class
utility::options::ScalarOptionKeyAbstract automatic hidden index key for scalar-valued options
yaml::tokens::ScalarToken
yaml::scanner::Scanner
yaml::scanner::ScannerError
ScoreBenchmark
yaml::events::SequenceEndEvent
yaml::nodes::SequenceNode
yaml::events::SequenceStartEvent
yaml::serializer::Serializer
yaml::serializer::SerializerError
session
utility::sql_database::session
ObjexxFCL::SetWrapper< T >SetWrapper: Insulating Wrapper of std::set That Can Be Forward Declared
ShearMoverBenchmark
utility::Show
utility::signals::SignalHub< ReturnType, Signal >Primary class for function based implementation of observer pattern
numeric::interpolation::spline::SimpleInterpolator
yaml::scanner::SimpleKey
ObjexxFCL::fmt::Skip
rosetta_py::utility::ForkManager::Slave
utility::keys::SmallKeyMap< K, T >Keyed-access map with key subset map
utility::keys::SmallKeyVector< K, T >Keyed-access vector with key subset map
SmallMoverBenchmark
utility::SortFirst< S, T >
utility::SortSecond< S, T >
numeric::sphericalVector< T >SphericalVector: Fast spherical-coordinate numeric vector
numeric::interpolation::spline::SplineGenerator
utility::sql_database::Sqlite3Interface
numeric::random::standard_RGGenerator based on rand() < clib > function
ObjexxFCL::StarStar: Sentinel for Assumed Size Array Upper Bound
ObjexxFCL::StaticIndexRangeStaticIndexRange: Static Index Range
yaml::events::StreamEndEvent
yaml::tokens::StreamEndToken
yaml::events::StreamStartEvent
yaml::tokens::StreamStartToken
utility::options::StringOptionProgram string option class
utility::options::StringOptionKeyAutomatic hidden index key for string options
utility::options::StringVectorOptionProgram string option class
utility::options::StringVectorOptionKeyAutomatic hidden index key for string options
utility::subset_mappingThis class handles the bookeeping to map between a set of integer ids in the "source" enumeration to a subset of those ids -- the destination enumartion. Elements in the source enumeration that do not map to elements in the destination enumeration are represented by the value 0. Both enumerations should count from 1. Once the class has been initialized, this class offers O(1) mapping between elements in the enumerations
basic::svd::SVD_Solver
utility::tag::Tag
yaml::tokens::TagToken
ThreadingMover
yaml::tokens::Token
utility::signals::TokenHub< ReturnType, Signal >BufferedSignalHub capable of passing observers
utility::TopScoreSelector< T, S >The TopScoreSelector keeps an in-place, sorted, singly-linked list of the N top-scoring objects and their scores that it encounters. In the case of ties, the first object(s) encountered are kept. Class T must have a default constructor, a copy constructor, and must be assignable. Class S must be assignable and comparable, both by a < operator and by a > operator
basic::TracerClass for handling user debug/warnings/errors. Use instance of this class instead of 'std::cout' for all your regular io. Channel argument must be related to the location of the source file. For example if you create Tracer object in src/basic/scoring/myfile.cc, then channel must be something like 'src.basic.scoring.myfile'
basic::TracerOptionsData structure to store all system level options for Tracer system
basic::Tracer::TracerProxySmall inner class acting as a proxy to an object that hold it
basic::TracerToFile
rosetta_py::utility::r3::Triple
numeric::histograms::TwoDHistogram< key1, key2 >
type
ObjexxFCL::TypeTraits< T >TypeTraits: Type Traits Template
ObjexxFCL::TypeTraits< double >TypeTraits: Type Traits double Specialization
ObjexxFCL::TypeTraits< float >TypeTraits: Type Traits float Specialization
ObjexxFCL::TypeTraits< int >TypeTraits: Type Traits int Specialization
ObjexxFCL::TypeTraits< long double >TypeTraits: Type Traits long double Specialization
ObjexxFCL::TypeTraits< long int >TypeTraits: Type Traits long int Specialization
ObjexxFCL::TypeTraits< short int >TypeTraits: Type Traits short int Specialization
ObjexxFCL::TypeTraits< unsigned int >TypeTraits: Type Traits unsigned int Specialization
ObjexxFCL::TypeTraits< unsigned long int >TypeTraits: Type Traits unsigned long int Specialization
ObjexxFCL::TypeTraits< unsigned short int >TypeTraits: Type Traits unsigned short int Specialization
UBQ_E2Mover
ObjexxFCL::ubyteUbyte: One-Byte Integer
numeric::random::uniform_RGUniform random number generator
utility::keys::UserKey< O, S, C >User-created hidden index key abstract base class
yaml::tokens::ValueToken
utility::keys::VariantKey< K >Variant key class
utility::options::VariantOption< O >Variant option class
utility::vector0< T, A >Std::vector with assert-checked bounds
utility::vector0< bool, A >Std::vector with assert-checked bounds: bool specialization
utility::vector1< T, A >Std::vector with 1-based indexing
utility::vector1< bool, A >Std::vector with 1-based indexing: bool specialization
utility::vectorL< L, T, A >Std::vector with L-based indexing
utility::vectorL< L, bool, A >Std::vector with L-based indexing: bool specialization
utility::vectorL_IndexSelector< bool >VectorL index type selector: Nonnegative lower index non-specialization
utility::vectorL_IndexSelector< false >VectorL index type selector: Negative lower index specialization
utility::vectorL_ZeroSelector< bool >VectorL lower index zero selector: Nonzero lower index non-specialization
utility::vectorL_ZeroSelector< false >VectorL lower index zero selector: Zero lower index specialization
utility::options::VectorOptionProgram vector-valued option interface class
utility::options::VectorOption_T_< K, T >Program vector-valued option abstract base class
utility::options::VectorOptionKeyAbstract automatic hidden index key for vector-valued options
W128_T
numeric::random::WeightedSampler
utility::factory::WidgetFactory< Creator >Factory base class holds a map between strings and owning pointers of the creator classes. This should only be used as a base class for a WidgetFactory which expects to map between strings and Creators. WidgetRegistrators may be used reguardless of how the Factory method maps to its Creators
utility::factory::WidgetRegistrator< FACTORY, CREATOR >This class will register a Creator with a Factory at load time
parallel::Worker
numeric::kdtree::WrappedPrimitive< T >
wrapper
Wrapper_PosePyObserver
Wrapper_PyMover
numeric::xyzMatrix< T >XyzMatrix: Fast 3x3 xyz matrix template
numeric::xyzTriple< T >Fast (x,y,z)-coordinate vector container
numeric::xyzVector< T >XyzVector: Fast (x,y,z)-coordinate numeric vector
basic::YamlEmitterEmitter for more classically formatted YAML
yaml::error::YAMLError
yaml::YAMLObject
yaml::YAMLObjectMetaclass
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