| utility::pointer::access_ptr< T > | Non-owning access smart pointer |
| yaml::events::AliasEvent | |
| yaml::tokens::AliasToken | |
| AnchorFinderMover | AnchorFinder mover |
| yaml::tokens::AnchorToken | |
| utility::options::AnyOption< T > | Program any scalar-valued option abstract base class |
| utility::options::AnyOptionKey | Automatic hidden index key for any scalar-valued options |
| utility::options::AnyVectorOption< T > | Program any vector-valued option abstract base class |
| utility::options::AnyVectorOptionKey | Automatic hidden index key for any vector-valued options |
| APDBCMover | APDBC mover |
| rosetta_py::io::mdl_molfile::Atom | |
| rosetta_py::io::pdb::Atom | |
| AtomXYZ | |
| utility::keys::AutoKey< O, S, C > | Automatic hidden index key abstract base class |
| yaml::constructor::BaseConstructor | |
| yaml::dumper::BaseDumper | |
| yaml::loader::BaseLoader | |
| yaml::representer::BaseRepresenter | |
| yaml::resolver::BaseResolver | |
| BaseWrap | |
| utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > | A mpiper ostream |
| utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > | Base class for mpi ostreams |
| utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > | A stream decorator that takes raw input and zips it to a ostream |
| basic::basic_otstream< CharT, Traits > | Base class for Tracer, TracerProxy and UTracer objects |
| basic_streambuf | |
| basic_stringbuf | |
| basic::basic_otstream< CharT, Traits >::basic_tstringbuf< _CharT, _Traits > | Wrapper class for std::stringbuf |
| zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > | A stream decorator that takes compressed input and unzips it to a istream |
| zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT > | A zipper istream |
| zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT > | Base class for unzip istreams |
| zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT > | A zipper ostream |
| zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > | Base class for zip ostreams |
| zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > | A stream decorator that takes raw input and zips it to a ostream |
| basic::datacache::BasicDataCache | A DataCache storing objects derived from basic::datacache::CacheableData |
| utility::keys::lookup::begin< K > | Key lookup begin iterator functor |
| Benchmark | |
| numeric::interpolation::spline::BicubicSpline | |
| ObjexxFCL::fmt::Bite< T > | |
| utility::BitSet< B > | Simple bit set |
| utility::BitVector< B > | Simple bit vector |
| yaml::tokens::BlockEndToken | |
| yaml::tokens::BlockEntryToken | |
| yaml::tokens::BlockMappingStartToken | |
| yaml::tokens::BlockSequenceStartToken | |
| numeric::BodyPosition< T > | Rigid body 3-D position/transform |
| rosetta_py::io::mdl_molfile::Bond | |
| utility::options::BooleanOption | Program boolean option class |
| utility::options::BooleanOptionKey | Automatic hidden index key for boolean options |
| utility::options::BooleanVectorOption | Program boolean vector option class |
| utility::options::BooleanVectorOptionKey | Automatic hidden index key for boolean options |
| utility::Bound< T > | Bound value class |
| numeric::geometry::BoundingBox< T > | 3d axis aligned bounding box class |
| utility::signals::BufferedSignalHub< ReturnType, Signal > | SignalHub capable of buffering while blocking |
| ObjexxFCL::byte | Byte: One-Byte Integer |
| basic::datacache::CacheableData | Base class for data storable within a DataCache |
| basic::datacache::CacheableString | Wrapper for std::string |
| basic::datacache::CacheableStringFloatMap | Wrapper for std::map< std::string, float > |
| basic::datacache::CacheableStringMap | Wrapper for a map< string, string > |
| ObjexxFCL::CArray< T > | CArray: Memory-Managed C Array Wrapper |
| ObjexxFCL::CArrayP< T > | CArrayP: Memory-Managed C Array Wrapper Supporting Proxies |
| yaml::cyaml::CBaseDumper | |
| yaml::cyaml::CBaseLoader | |
| tools::CppParser::CD | |
| yaml::cyaml::CDumper | |
| CEmitter | |
| ObjexxFCL::Chunk< T > | Chunk: Contiguous Array for Use in ChunkVector |
| ObjexxFCL::ChunkExponent | ChunkExponent: ChunkVector Exponent Wrapper for Function Disambiguation and Range Clipping |
| ObjexxFCL::ChunkVector< T > | ChunkVector: Chunk-Contiguous Vector for Fast Very Large Vectors |
| tools::CppParser::ClangXML | |
| utility::keys::ClassKeyMap< K, T, C > | Keyed-access map with key subset map for each client class |
| utility::keys::ClassKeyVector< K, T, C > | Keyed-access vector with key subset map for each client class |
| yaml::constructor::Constructor::classobj | |
| yaml::cyaml::CLoader | |
| numeric::ClusteringTreeNode | |
| yaml::events::CollectionEndEvent | |
| yaml::nodes::CollectionNode | |
| yaml::events::CollectionStartEvent | |
| numeric::ColPointers< T > | |
| numeric::ColsPointer< T > | |
| numeric::ColVectors< T > | |
| numeric::interpolation::spline::compare_interp_range | |
| numeric::kdtree::CompareKDPoints | |
| basic::ComparingTracer | |
| yaml::composer::Composer | |
| yaml::composer::ComposerError | |
| numeric::interpolation::spline::CompoundInterpolator | |
| yaml::constructor::Constructor | |
| yaml::constructor::ConstructorError | |
| ContextIndependentOneBodyEnergy | |
| utility::query::Converter< T, N > | |
| utility::query::Converter1Param< T, A, N > | |
| tools::CppParser::CppClass | |
| tools::CppParser::CppEnum | |
| tools::CppParser::CppFunction | |
| tools::CppParser::CppNamespace | |
| tools::CppParser::CppType | |
| tools::CppParser::CppType_Complex | |
| tools::CppParser::CppType_Composite | |
| tools::CppParser::CppType_Fundamental | |
| tools::CppParser::CppType_Simple | |
| tools::CppParser::CppType_Typedef | |
| tools::CppParser::CppVariable | |
| yaml::cyaml::CSafeDumper | |
| yaml::cyaml::CSafeLoader | |
| ObjexxFCL::Cstring | Cstring: C String Wrapper |
| numeric::interpolation::spline::CubicSpline | |
| utility::sql_database::DatabaseSessionManager | |
| basic::datacache::DataCache< Data > | Indexed storage for objects derived from a ReferenceCountable data type |
| basic::datacache::DataCache_CacheableData | |
| DemoBase | |
| DemoDerived | |
| utility::DereferenceIterator< Container > | Const_iterator class for SilentFileData container |
| DesignBenchmark | |
| basic::datacache::DiagnosticData | Wrapper for std::map<string, Real> |
| ObjexxFCL::Dimension | Dimension: Dynamic Dimension |
| ObjexxFCL::DimensionExpression | DimensionExpression: DimensionExpression Interface Class |
| ObjexxFCL::DimensionExpressionCon | DimensionExpressionCon: Constant-Valued DimensionExpression |
| ObjexxFCL::DimensionExpressionCube | DimensionExpressionCube: DimensionExpression Cube Function |
| ObjexxFCL::DimensionExpressionDiv | DimensionExpressionDiv: DimensionExpression Binary Division |
| ObjexxFCL::DimensionExpressionMax | DimensionExpressionMax: DimensionExpression Binary Max Function |
| ObjexxFCL::DimensionExpressionMin | DimensionExpressionMin: DimensionExpression Binary Min Function |
| ObjexxFCL::DimensionExpressionMul | DimensionExpressionMul: DimensionExpression Binary Product |
| ObjexxFCL::DimensionExpressionPow | DimensionExpressionPow: DimensionExpression Power Function: expression1^expression2 |
| ObjexxFCL::DimensionExpressionRef | DimensionExpressionRef: Dimension Reference DimensionExpression |
| ObjexxFCL::DimensionExpressionSquare | DimensionExpressionSquare: DimensionExpression Square Function |
| ObjexxFCL::DimensionExpressionSub | DimensionExpressionSub: DimensionExpression Binary Subtraction |
| ObjexxFCL::DimensionExpressionSum | DimensionExpressionSum: DimensionExpression Binary Sum |
| yaml::tokens::DirectiveToken | |
| DockingBenchmark< dock, TScale > | |
| arls_impl::DockingCase | |
| arls_impl::DockingFile | |
| yaml::events::DocumentEndEvent | |
| yaml::tokens::DocumentEndToken | |
| yaml::events::DocumentStartEvent | |
| yaml::tokens::DocumentStartToken | |
| tools::dox_extract::dox_extract | |
| tools::DoxygenExtractorPyPP::doxygen_doc_extractor | |
| DummyMover | This "DummyMover" is employed simply to prevent NULL pointer exceptions in case internal classes try to call Mover methods without checking for pointer validity. The JobDistributor/DockDesignParser will/should reassign this pointer to a real Mover |
| yaml::dumper::Dumper | |
| ObjexxFCL::DynamicIndexRange | DynamicIndexRange: Dynamic Index Range |
| basic::Emitter | Lightweight class to ease writting YAML documents (http://yaml.org) |
| yaml::emitter::Emitter | |
| yaml::emitter::EmitterError | |
| parallel::Empty | |
| utility::keys::lookup::end< K > | Key lookup end iterator functor |
| EnergyMethodCreator | |
| yaml::events::Event | |
| Exception | |
| utility::excn::EXCN_BadInput | |
| utility::excn::EXCN_Base | |
| utility::excn::EXCN_Exception | |
| utility::excn::EXCN_FileNotFound | |
| utility::excn::EXCN_IO | |
| utility::excn::EXCN_Msg_Exception | |
| utility::excn::EXCN_NullPointer | |
| utility::excn::EXCN_RangeError | |
| utility::EXCN_utility_exit | |
| utility::factory::Factory< P > | Pluggable factory |
| ObjexxFCL::FArray< T > | FArray: Fortran-Compatible Array Hierarchy Abstract Base Class |
| ObjexxFCL::FArray1< T > | FArray1: Fortran-Compatible 1D Array Abstract Base Class |
| ObjexxFCL::FArray1A< T > | FArray1A: Fortran-Compatible 1D Argument Array |
| ObjexxFCL::FArray1D< T > | FArray1D: Fortran-Compatible 1D Array |
| ObjexxFCL::FArray1P< T > | FArray1P: Fortran-Compatible 1D Proxy Array |
| ObjexxFCL::FArray2< T > | FArray2: Fortran-Compatible 2D Array Abstract Base Class |
| ObjexxFCL::FArray2A< T > | FArray2A: Fortran-Compatible 2D Argument Array |
| ObjexxFCL::FArray2D< T > | FArray2D: Fortran-Compatible 2D Array |
| ObjexxFCL::FArray2P< T > | FArray2P: Fortran-Compatible 2D Proxy Array |
| ObjexxFCL::FArray3< T > | FArray3: Fortran-Compatible 3D Array Abstract Base Class |
| ObjexxFCL::FArray3A< T > | FArray3A: Fortran-Compatible 3D Argument Array |
| ObjexxFCL::FArray3D< T > | FArray3D: Fortran-Compatible 3D Array |
| ObjexxFCL::FArray3P< T > | FArray3P: Fortran-Compatible 3D Proxy Array |
| ObjexxFCL::FArray4< T > | FArray4: Fortran-Compatible 4D Array Abstract Base Class |
| ObjexxFCL::FArray4A< T > | FArray4A: Fortran-Compatible 4D Argument Array |
| ObjexxFCL::FArray4D< T > | FArray4D: Fortran-Compatible 4D Array |
| ObjexxFCL::FArray4P< T > | FArray4P: Fortran-Compatible 4D Proxy Array |
| ObjexxFCL::FArray5< T > | FArray5: Fortran-Compatible 5D Array Abstract Base Class |
| ObjexxFCL::FArray5A< T > | FArray5A: Fortran-Compatible 5D Argument Array |
| ObjexxFCL::FArray5D< T > | FArray5D: Fortran-Compatible 5D Array |
| ObjexxFCL::FArray5P< T > | FArray5P: Fortran-Compatible 5D Proxy Array |
| ObjexxFCL::FArray6< T > | FArray6: Fortran-Compatible 6D Array Abstract Base Class |
| ObjexxFCL::FArray6A< T > | FArray6A: Fortran-Compatible 5D Argument Array |
| ObjexxFCL::FArray6D< T > | FArray6D: Fortran-Compatible 5D Array |
| ObjexxFCL::FArray6P< T > | FArray6P: Fortran-Compatible 5D Proxy Array |
| ObjexxFCL::FArrayInitializer< T, Array > | FArrayInitializer: FArray Initializer Class Template |
| ObjexxFCL::FArraySection< T > | FArraySection: Fortran-Compatible Array Section Proxy |
| ObjexxFCL::FArrayTraits< T > | FArrayTraits: FArray Traits Template |
| ObjexxFCL::FastRemainderSelector< T, bool > | Fast remainder function selector class for non-integer types |
| numeric::FastRemainderSelector< T, bool > | Fast remainder function selector class for non-integer types |
| ObjexxFCL::FastRemainderSelector< T, true > | Fast remainder function selector class for integer types |
| numeric::FastRemainderSelector< T, true > | Fast remainder function selector class for integer types |
| FastThreadingMover | |
| utility::file::FileName | File name class supporting Windows and UN*X/Linux format names |
| utility::options::FileOption | Program file option class |
| utility::options::FileOptionKey | Automatic hidden index key for file options |
| utility::options::FileVectorOption | Program file vector option class |
| utility::options::FileVectorOptionKey | Automatic hidden index key for file options |
| utility::query::Filter< T > | |
| utility::query::Filter0Param< T > | |
| utility::query::Filter1Param< T, A > | |
| utility::query::Filter1ParamGenerator< T, A > | |
| utility::query::Filter_And< T > | |
| utility::query::Filter_Not< T > | |
| utility::query::Filter_Or< T > | |
| utility::query::FilterBase< T > | |
| utility::fixedsizearray1< T, S > | |
| utility::fixedsizearray1const_iterator< T, S > | |
| utility::fixedsizearray1iterator< T, S > | |
| utility::FixedSizeLexicographicalIterator< S > | |
| FloppyTailMover | FloppyTail mover |
| yaml::tokens::FlowEntryToken | |
| yaml::tokens::FlowMappingEndToken | |
| yaml::tokens::FlowMappingStartToken | |
| yaml::tokens::FlowSequenceEndToken | |
| yaml::tokens::FlowSequenceStartToken | |
| rosetta_py::utility::ForkManager::ForkManager | |
| ObjexxFCL::Fstring | Fstring: Fixed-Length Fortran-Compatible String |
| ObjexxFCL::Fsubstring | Fsubstring: Fixed-Length Fortran-Compatible Substring |
| parallel::Full | |
| tools::CppParser::GccXML | |
| utility::keys::lookup::gen< K > | Key lookup/generator functor |
| utility::keys::lookup::has< K > | Key lookup has query functor |
| utility::heap | |
| numeric::interpolation::Histogram< X, Y > | A histogram with fixed-width bins |
| numeric::interpolation::HistogramAP< X, Y > | |
| numeric::interpolation::HistogramCAP< X, Y > | |
| numeric::interpolation::HistogramCOP< X, Y > | |
| numeric::interpolation::HistogramOP< X, Y > | |
| numeric::HomogeneousTransform< T > | |
| numeric::HomogeneousTransform_Double | |
| numeric::kdtree::HyperRectangle | |
| IAMover | |
| utility::io::icstream | Icstream: Input channel stream wrapper class |
| utility::query::ImplicitConverter< T, N > | |
| utility::in_place_list< T > | |
| IndentedHelpFormatter | |
| ObjexxFCL::IndexRange | IndexRange: Index Range Abstract Base Class |
| utility::IndirectSorter< DataContainerType, ComparatorType > | Sorts a container of things indirectly |
| ObjexxFCL::internal::InitializerSentinel | InitializerSentinel: FArray Constructor Initializer Sentinel Class |
| utility::Inline_File_Provider | |
| utility::options::IntegerOption | Program integer option class |
| utility::options::IntegerOptionKey | Automatic hidden index key for integer options |
| utility::options::IntegerVectorOption | Program integer vector option class |
| utility::options::IntegerVectorOptionKey | Automatic hidden index key for integer options |
| numeric::interpolation::spline::interp_range | |
| numeric::interpolation::spline::Interpolator | |
| numeric::IntervalSet< T > | |
| numeric::IntervalSet_Double | |
| numeric::IOTraits< T > | Numerics input/output type traits |
| numeric::IOTraits< double > | Numerics input/output type traits double specialization |
| numeric::IOTraits< float > | Numerics input/output type traits float Specialization |
| numeric::IOTraits< int > | Numerics input/output type traits int specialization |
| numeric::IOTraits< long double > | Numerics input/output type traits long double specialization |
| numeric::IOTraits< long int > | : Numerics input/output type traits long int specialization |
| numeric::IOTraits< short int > | Numerics input/output type traits short int specialization |
| numeric::IOTraits< unsigned int > | : Numerics input/output type traits unsigned int specialization |
| numeric::IOTraits< unsigned long int > | Numerics input/output type traits unsigned long int specialization |
| numeric::IOTraits< unsigned short int > | : Numerics input/output type traits unsigned short int specialization |
| utility::io::irstream | Orstream: Input stream wrapper abstract base class |
| utility::signals::IsLinkUnitInvalid< Function > | Struct useful as combined predicate + deallocation of function object contained inside a LinkUnit |
| utility::io::izstream | Izstream: Input file stream wrapper for uncompressed and compressed files |
| JDtestmover | Local mover for testing purposes |
| basic::JsonEmitter | Lightweight class to ease writting JSON documents, a subset of YAML (http://json.org) |
| numeric::kdtree::KDNode | |
| numeric::kdtree::KDPoint | |
| numeric::kdtree::KDPoint_MinDist | |
| numeric::kdtree::KDPointList | Class for keeping track of the closest N KDPoint objects by distance |
| numeric::kdtree::KDTree | |
| utility::keys::Key | Hidden index key interface class |
| utility::keys::lookup::key< K > | Key lookup key query functor |
| utility::keys::Key2Tuple< K1, K2 > | 2-tuple meta-key |
| utility::keys::Key2Vector< K > | 2-key meta-key |
| utility::keys::Key3Tuple< K1, K2, K3 > | 3-tuple meta-key |
| utility::keys::Key3Vector< K > | 3-key meta-key |
| utility::keys::Key4Tuple< K1, K2, K3, K4 > | 4-tuple meta-key |
| utility::keys::Key4Vector< K > | 4-key meta-key |
| utility::keys::KeyCount | Key counter functor |
| ObjexxFCL::KeyFArray1D< T > | KeyFArray1D: Key-Access Fortran-Compatible 1D Array |
| ObjexxFCL::KeyFArray2D< T > | KeyFArray2D: Key-Access Fortran-Compatible 2D Array |
| ObjexxFCL::KeyFArray3D< T > | KeyFArray3D: Key-Access Fortran-Compatible 3D Array |
| ObjexxFCL::KeyFArray4D< T > | KeyFArray4D: Key-Access Fortran-Compatible 4D Array |
| ObjexxFCL::KeyFArray5D< T > | KeyFArray5D: Key-Access Fortran-Compatible 5D Array |
| ObjexxFCL::KeyFArray6D< T > | KeyFArray6D: Key-Access Fortran-Compatible 6D Array |
| utility::keys::KeyLess< T, U > | Key member comparison functor template |
| utility::keys::KeyLookup< K > | Key lookup map and collection |
| utility::keys::KeyMapTraits< K, T > | KeyMap traits class |
| utility::keys::KeySetTraits< K > | KeySet traits class |
| yaml::tokens::KeyToken | |
| utility::keys::KeyVector< K, T > | Keyed-access vector |
| utility::keys::KeyVectorTraits< K > | KeyVector traits class |
| numeric::fourier::kiss_fft_state | |
| numeric::fourier::kiss_fftnd_state | |
| numeric::fourier::kiss_fftndr_state | |
| numeric::fourier::kiss_fftr_state | |
| utility::LexicographicalIterator | |
| LigandBaseProtocol | |
| LigandDockBenchmark | |
| LigandDockScriptBenchmark | |
| LigandRepackMinimizeProtocol | |
| utility::signals::Link | Interface wrapper around utility::signals::LinkUnit |
| utility::signals::LinkUnit | Struct specifying actual link data between observers and subjects |
| utility::list_element< T > | |
| yaml::loader::Loader | |
| yaml::events::MappingEndEvent | |
| yaml::nodes::MappingNode | |
| yaml::events::MappingStartEvent | |
| yaml::error::Mark | |
| yaml::error::MarkedYAMLError | |
| numeric::MathMatrix< T > | |
| numeric::MathVector< T > | |
| basic::MemTracer | |
| utility::query::Metric< T > | |
| utility::query::Metric0Param< T > | |
| utility::query::Metric1Param< T, A > | |
| utility::query::Metric1ParamGenerator< T, A > | |
| utility::query::Metric_Add< T > | |
| utility::query::Metric_Div< T > | |
| utility::query::Metric_Mult< T > | |
| utility::query::Metric_Neg< T > | |
| utility::query::Metric_Pow< T > | |
| utility::query::Metric_Sub< T > | |
| utility::query::MetricBase< T > | |
| utility::query::MetricConstant< T > | |
| utility::query::MetricInequality< T > | |
| basic::MetricValue< T > | |
| basic::MetricValueBase | |
| MinimizerBenchmark< sft, TScale > | |
| ObjexxFCL::ModSelector< T, bool > | Mod function selector class for non-integer types |
| numeric::ModSelector< T, bool > | Mod function selector class for non-integer types |
| ObjexxFCL::ModSelector< T, true > | Mod function selector class for integer types |
| numeric::ModSelector< T, true > | Mod function selector class for integer types |
| ObjexxFCL::ModuloSelector< T, bool > | Modulo function selector class for non-integer types |
| numeric::ModuloSelector< T, bool > | Modulo function selector class for non-integer types |
| numeric::ModuloSelector< T, true > | Modulo function selector class for integer types |
| ObjexxFCL::ModuloSelector< T, true > | Modulo function selector class for integer types |
| rosetta_py::io::mdl_molfile::Molfile | |
| Mover | |
| Mover | |
| MRMover | |
| numeric::random::mt19937_RG | |
| numeric::MultiDimensionalHistogram | Class for accumulating a histogram of one or more numeric variables |
| Mutate1Randomizer | Different set of choices at each position in Entity's traits |
| test::T850_SubClassing::My_New_Mover | |
| myMC | |
| test::T850_SubClassing::MyNewCI1B | |
| test::T850_SubClassing::MyNewCI1B_Creator | |
| MyScoreMover | |
| utility::keys::lookup::n_key< K > | Key lookup n_key query functor |
| ObjexxFCL::NearestSelector< R, T, bool > | Nearest function selector class for R non-integer or T integer |
| numeric::NearestSelector< R, T, bool > | Nearest function selector class for R non-integer or T integer |
| ObjexxFCL::NearestSelector< R, T, true > | Nearest function selector class for R integer and T non-integer |
| numeric::NearestSelector< R, T, true > | Nearest function selector class for R integer and T non-integer |
| utility::keys::NoClient | Default key policy class when no client is needed to distinguish key type |
| yaml::nodes::Node | |
| yaml::events::NodeEvent | |
| numeric::NumericTraits< T > | NumericTraits: Numeric type traits |
| numeric::NumericTraits< double > | NumericTraits: Numeric type traits double specialization |
| numeric::NumericTraits< float > | NumericTraits: Numeric type traits float specialization |
| numeric::NumericTraits< long double > | NumericTraits: Numeric type traits long double specialization |
| object | |
| ObjexxFCL::Observer | Observer: Combined Subject + Observer Abstract Base Class |
| ObjexxFCL::internal::ObserverGraph | ObserverGraph: Observer Graph Representation |
| ObjexxFCL::ObserverMulti | ObserverMulti: Combined Subject + Multi Observer Abstract Base Class |
| ObjexxFCL::ObserverSingle | ObserverSingle: Combined Subject + Single Observer Abstract Base Class |
| utility::io::ocstream | Ocstream: Output channel stream wrapper class |
| numeric::histograms::OneDHistogram< key1 > | |
| options_class::Option | |
| utility::options::Option | Program option interface class |
| utility::options::OptionCollection | Program options collection |
| utility::options::OptionKey | Abstract automatic hidden index key for options |
| utility::OrderedTuple< T > | The ordered tuple takes a container class T and defines comparison operators so that the tuple may be sorted |
| numeric::interpolation::spline::OrderPoint | |
| utility::io::orstream | Orstream: Output stream wrapper base class |
| utility::pointer::owning_ptr< T > | Shared-ownership intrusive reference-counted smart pointer |
| utility::io::ozstream | Ozstream: Output file stream wrapper for uncompressed and compressed files |
| parallel::ParagraphHelpFormatter | |
| yaml::parser::Parser | |
| yaml::parser::ParserError | |
| utility::file::PathName | Path name class supporting Windows and UN*X/Linux format names |
| utility::options::PathOption | Program path option class |
| utility::options::PathOptionKey | Automatic hidden index key for path options |
| utility::options::PathVectorOption | Program path vector option class |
| utility::options::PathVectorOptionKey | Automatic hidden index key for path options |
| utility::signals::PausableSignalHub< ReturnType, Signal > | BufferedSignalHub capable of pausing and waiting for stdin |
| rosetta_py::io::pdb::PdbRecord | |
| pep_coord_cst | |
| utility::PeriodicSplineReader | Class: PeriodicSplineReader |
| numeric::interpolation::spline::Point | |
| utility::keys::PointerKeyLess< T, U > | Key member comparison functor template for pointers |
| PosePyObserver | |
| PosePyObserver | |
| PosePyObserver2 | |
| PositionSpecificRandomizer | |
| PyMOLPyRosettaServer::PR_PyMOLServer | |
| NetLink::PR_UDPServer | |
| PyMOLPyRosettaServer::PR_UDPServer | |
| molfile_to_params::PreformattedDescFormatter | |
| basic::ProfileThis | |
| ObjexxFCL::internal::ProxySentinel | ProxySentinel: FArray Constructor Proxy Sentinel Class |
| src::PyJobDistributor | |
| src::PyMOL_Mover | |
| src::PyMOL_Observer | |
| PyMover | |
| PyMover | |
| src::PySocketClient | |
| numeric::Quaternion< T > | Unit quaternion 3-D orientation representation |
| parallel::Queue | |
| numeric::random::RandomGenerator | Random number generator system |
| utility::RawType< T > | Meta-programming classes to provide the pointer type for down_cast |
| utility::RawType< T & > | |
| utility::RawType< T * > | |
| yaml::reader::Reader | |
| yaml::reader::ReaderError | |
| utility::options::RealOption | Program real option class |
| utility::options::RealOptionKey | Automatic hidden index key for real options |
| utility::options::RealVectorOption | Program real vector option class |
| utility::options::RealVectorOptionKey | Automatic hidden index key for real options |
| utility::pointer::ReferenceCount | Base class for reference-counted polymorphic classes |
| utility::pointer::ReferenceCountMI | Interface class for reference counted polymorphic classes |
| utility::pointer::ReferenceCountMI_ | Base class for reference counted polymorphic classes |
| tools::CppParser::ReferenceSection | |
| utility::factory::Registrant< P > | Factory registrant |
| ObjexxFCL::RemainderSelector< T, bool > | Remainder function selector class for non-integer types |
| numeric::RemainderSelector< T, bool > | Remainder function selector class for non-integer types |
| ObjexxFCL::RemainderSelector< T, true > | Remainder function selector class for integer types |
| numeric::RemainderSelector< T, true > | Remainder function selector class for integer types |
| yaml::representer::Representer | |
| yaml::representer::RepresenterError | |
| numeric::random::ReservoirSampler< T > | Simple container for keeping K random values |
| yaml::resolver::Resolver | |
| yaml::resolver::ResolverError | |
| rmsd_score_pymol_plotter::RMSD_score_plotter | |
| numeric::model_quality::RmsData | RmsData is a class intended to replace the global rms_obj namespace from rosetta++. Initial implementation is with a singleton design pattern to mimic a global namespace from rosetta++ |
| numeric::RowPointers< T > | |
| numeric::RowsPointer< T > | |
| numeric::RowVectors< T > | |
| S | |
| yaml::constructor::SafeConstructor | |
| yaml::dumper::SafeDumper | |
| yaml::loader::SafeLoader | |
| yaml::representer::SafeRepresenter | |
| yaml::emitter::ScalarAnalysis | |
| yaml::events::ScalarEvent | |
| yaml::nodes::ScalarNode | |
| utility::options::ScalarOption | Program scalar-valued option interface class |
| utility::options::ScalarOption_T_< K, T > | Program scalar-valued option abstract base class |
| utility::options::ScalarOptionKey | Abstract automatic hidden index key for scalar-valued options |
| yaml::tokens::ScalarToken | |
| yaml::scanner::Scanner | |
| yaml::scanner::ScannerError | |
| ScoreBenchmark | |
| yaml::events::SequenceEndEvent | |
| yaml::nodes::SequenceNode | |
| yaml::events::SequenceStartEvent | |
| yaml::serializer::Serializer | |
| yaml::serializer::SerializerError | |
| session | |
| utility::sql_database::session | |
| ObjexxFCL::SetWrapper< T > | SetWrapper: Insulating Wrapper of std::set That Can Be Forward Declared |
| ShearMoverBenchmark | |
| utility::Show | |
| utility::signals::SignalHub< ReturnType, Signal > | Primary class for function based implementation of observer pattern |
| numeric::interpolation::spline::SimpleInterpolator | |
| yaml::scanner::SimpleKey | |
| ObjexxFCL::fmt::Skip | |
| rosetta_py::utility::ForkManager::Slave | |
| utility::keys::SmallKeyMap< K, T > | Keyed-access map with key subset map |
| utility::keys::SmallKeyVector< K, T > | Keyed-access vector with key subset map |
| SmallMoverBenchmark | |
| utility::SortFirst< S, T > | |
| utility::SortSecond< S, T > | |
| numeric::sphericalVector< T > | SphericalVector: Fast spherical-coordinate numeric vector |
| numeric::interpolation::spline::SplineGenerator | |
| utility::sql_database::Sqlite3Interface | |
| numeric::random::standard_RG | Generator based on rand() < clib > function |
| ObjexxFCL::Star | Star: Sentinel for Assumed Size Array Upper Bound |
| ObjexxFCL::StaticIndexRange | StaticIndexRange: Static Index Range |
| yaml::events::StreamEndEvent | |
| yaml::tokens::StreamEndToken | |
| yaml::events::StreamStartEvent | |
| yaml::tokens::StreamStartToken | |
| utility::options::StringOption | Program string option class |
| utility::options::StringOptionKey | Automatic hidden index key for string options |
| utility::options::StringVectorOption | Program string option class |
| utility::options::StringVectorOptionKey | Automatic hidden index key for string options |
| utility::subset_mapping | This class handles the bookeeping to map between a set of integer ids in the "source" enumeration to a subset of those ids -- the destination enumartion. Elements in the source enumeration that do not map to elements in the destination enumeration are represented by the value 0. Both enumerations should count from 1. Once the class has been initialized, this class offers O(1) mapping between elements in the enumerations |
| basic::svd::SVD_Solver | |
| utility::tag::Tag | |
| yaml::tokens::TagToken | |
| ThreadingMover | |
| yaml::tokens::Token | |
| utility::signals::TokenHub< ReturnType, Signal > | BufferedSignalHub capable of passing observers |
| utility::TopScoreSelector< T, S > | The TopScoreSelector keeps an in-place, sorted, singly-linked list of the N top-scoring objects and their scores that it encounters. In the case of ties, the first object(s) encountered are kept. Class T must have a default constructor, a copy constructor, and must be assignable. Class S must be assignable and comparable, both by a < operator and by a > operator |
| basic::Tracer | Class for handling user debug/warnings/errors. Use instance of this class instead of 'std::cout' for all your regular io. Channel argument must be related to the location of the source file. For example if you create Tracer object in src/basic/scoring/myfile.cc, then channel must be something like 'src.basic.scoring.myfile' |
| basic::TracerOptions | Data structure to store all system level options for Tracer system |
| basic::Tracer::TracerProxy | Small inner class acting as a proxy to an object that hold it |
| basic::TracerToFile | |
| rosetta_py::utility::r3::Triple | |
| numeric::histograms::TwoDHistogram< key1, key2 > | |
| type | |
| ObjexxFCL::TypeTraits< T > | TypeTraits: Type Traits Template |
| ObjexxFCL::TypeTraits< double > | TypeTraits: Type Traits double Specialization |
| ObjexxFCL::TypeTraits< float > | TypeTraits: Type Traits float Specialization |
| ObjexxFCL::TypeTraits< int > | TypeTraits: Type Traits int Specialization |
| ObjexxFCL::TypeTraits< long double > | TypeTraits: Type Traits long double Specialization |
| ObjexxFCL::TypeTraits< long int > | TypeTraits: Type Traits long int Specialization |
| ObjexxFCL::TypeTraits< short int > | TypeTraits: Type Traits short int Specialization |
| ObjexxFCL::TypeTraits< unsigned int > | TypeTraits: Type Traits unsigned int Specialization |
| ObjexxFCL::TypeTraits< unsigned long int > | TypeTraits: Type Traits unsigned long int Specialization |
| ObjexxFCL::TypeTraits< unsigned short int > | TypeTraits: Type Traits unsigned short int Specialization |
| UBQ_E2Mover | |
| ObjexxFCL::ubyte | Ubyte: One-Byte Integer |
| numeric::random::uniform_RG | Uniform random number generator |
| utility::keys::UserKey< O, S, C > | User-created hidden index key abstract base class |
| yaml::tokens::ValueToken | |
| utility::keys::VariantKey< K > | Variant key class |
| utility::options::VariantOption< O > | Variant option class |
| utility::vector0< T, A > | Std::vector with assert-checked bounds |
| utility::vector0< bool, A > | Std::vector with assert-checked bounds: bool specialization |
| utility::vector1< T, A > | Std::vector with 1-based indexing |
| utility::vector1< bool, A > | Std::vector with 1-based indexing: bool specialization |
| utility::vectorL< L, T, A > | Std::vector with L-based indexing |
| utility::vectorL< L, bool, A > | Std::vector with L-based indexing: bool specialization |
| utility::vectorL_IndexSelector< bool > | VectorL index type selector: Nonnegative lower index non-specialization |
| utility::vectorL_IndexSelector< false > | VectorL index type selector: Negative lower index specialization |
| utility::vectorL_ZeroSelector< bool > | VectorL lower index zero selector: Nonzero lower index non-specialization |
| utility::vectorL_ZeroSelector< false > | VectorL lower index zero selector: Zero lower index specialization |
| utility::options::VectorOption | Program vector-valued option interface class |
| utility::options::VectorOption_T_< K, T > | Program vector-valued option abstract base class |
| utility::options::VectorOptionKey | Abstract automatic hidden index key for vector-valued options |
| W128_T | |
| numeric::random::WeightedSampler | |
| utility::factory::WidgetFactory< Creator > | Factory base class holds a map between strings and owning pointers of the creator classes. This should only be used as a base class for a WidgetFactory which expects to map between strings and Creators. WidgetRegistrators may be used reguardless of how the Factory method maps to its Creators |
| utility::factory::WidgetRegistrator< FACTORY, CREATOR > | This class will register a Creator with a Factory at load time |
| parallel::Worker | |
| numeric::kdtree::WrappedPrimitive< T > | |
| wrapper | |
| Wrapper_PosePyObserver | |
| Wrapper_PyMover | |
| numeric::xyzMatrix< T > | XyzMatrix: Fast 3x3 xyz matrix template |
| numeric::xyzTriple< T > | Fast (x,y,z)-coordinate vector container |
| numeric::xyzVector< T > | XyzVector: Fast (x,y,z)-coordinate numeric vector |
| basic::YamlEmitter | Emitter for more classically formatted YAML |
| yaml::error::YAMLError | |
| yaml::YAMLObject | |
| yaml::YAMLObjectMetaclass | |
1.7.4
