Rosetta 3.3
Functions | Variables
src/apps/public/backrub.cc File Reference

run backrub Monte Carlo More...

#include <protocols/branch_angle/BranchAngleOptimizer.hh>
#include <protocols/jobdist/Jobs.hh>
#include <protocols/jobdist/standard_mains.hh>
#include <protocols/moves/BackboneMover.hh>
#include <protocols/moves/BackrubMover.hh>
#include <protocols/moves/MinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/PackRotamersMover.hh>
#include <protocols/moves/SidechainMover.hh>
#include <protocols/moves/TrajectoryRecorder.hh>
#include <protocols/viewer/viewers.hh>
#include <core/chemical/ResidueType.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/init.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.hh>
#include <platform/types.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/backrub.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <protocols/moves/MoverStatistics.hh>
#include <utility/io/mpistream.hh>
#include <fstream>

Functions

void * my_main (void *)
int main (int argc, char *argv[])
bool read_fold_tree_from_file (core::kinematics::FoldTree &foldtree, std::string filepath)
bool read_fold_tree_from_file (core::pose::Pose &pose, std::string filepath)
void append_fold_tree_to_file (core::kinematics::FoldTree const &foldtree, std::string file_path)
utility::vector1< core::Size > positions_incompatible_with_task (core::pose::Pose &pose, core::pack::task::PackerTask &packertask)

Variables

static
numeric::random::RandomGenerator 
RG (222578262)
basic::Tracer TR ("apps.backrub")

Detailed Description

run backrub Monte Carlo

Author:
Colin A. Smith (colin.smith@ucsf.edu)
Detailed:
Currently a work in progress. The goal is to match the features of rosetta++ -backrub_mc

Function Documentation

void append_fold_tree_to_file ( core::kinematics::FoldTree const &  foldtree,
std::string  file_path 
)
int main ( int  argc,
char *  argv[] 
)
void * my_main ( void *  )
utility::vector1<core::Size> positions_incompatible_with_task ( core::pose::Pose &  pose,
core::pack::task::PackerTask &  packertask 
)

References color_pdb::i.

Referenced by my_main().

bool read_fold_tree_from_file ( core::pose::Pose &  pose,
std::string  filepath 
)

References read_fold_tree_from_file(), and TR.

bool read_fold_tree_from_file ( core::kinematics::FoldTree &  foldtree,
std::string  filepath 
)

Variable Documentation

numeric::random::RandomGenerator RG(222578262) [static]
basic::Tracer TR("apps.backrub")
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