Rosetta 3.3
Namespaces | Functions
score Namespace Reference

Namespaces

namespace  saxs

Functions

BooleanOptionKey const score ("score")
StringOptionKey const weights ("score:weights")
StringOptionKey const custom_atom_pair ("score:custom_atom_pair")
StringOptionKey const patch ("score:patch")
BooleanOptionKey const empty ("score:empty")
RealOptionKey const fa_max_dis ("score:fa_max_dis")
BooleanOptionKey const fa_Hatr ("score:fa_Hatr")
BooleanOptionKey const no_smooth_etables ("score:no_smooth_etables")
RealOptionKey const etable_lr ("score:etable_lr")
BooleanOptionKey const no_lk_polar_desolvation ("score:no_lk_polar_desolvation")
StringOptionKey const input_etables ("score:input_etables")
StringOptionKey const output_etables ("score:output_etables")
RealOptionKey const rms_target ("score:rms_target")
BooleanOptionKey const ramaneighbors ("score:ramaneighbors")
StringOptionKey const optH_weights ("score:optH_weights")
StringOptionKey const optH_patch ("score:optH_patch")
StringOptionKey const hbond_params ("score:hbond_params")
IntegerOptionKey const symE_units ("score:symE_units")
RealOptionKey const symE_bonus ("score:symE_bonus")
RealOptionKey const NV_lbound ("score:NV_lbound")
RealOptionKey const NV_ubound ("score:NV_ubound")
StringOptionKey const NV_table ("score:NV_table")
BooleanOptionKey const disable_orientation_dependent_rna_ch_o_bonds ("score:disable_orientation_dependent_rna_ch_o_bonds")
BooleanOptionKey const find_neighbors_3dgrid ("score:find_neighbors_3dgrid")
StringOptionKey const seqdep_refene_fname ("score:seqdep_refene_fname")
StringOptionKey const secondary_seqdep_refene_fname ("score:secondary_seqdep_refene_fname")
BooleanOptionKey const exact_occ_pairwise ("score:exact_occ_pairwise")
BooleanOptionKey const exact_occ_skip_Hbonders ("score:exact_occ_skip_Hbonders")
BooleanOptionKey const exact_occ_include_Hbond_contribution ("score:exact_occ_include_Hbond_contribution")
BooleanOptionKey const exact_occ_pairwise_by_res ("score:exact_occ_pairwise_by_res")
BooleanOptionKey const exact_occ_split_between_res ("score:exact_occ_split_between_res")
BooleanOptionKey const exact_occ_self_res_no_occ ("score:exact_occ_self_res_no_occ")
RealOptionKey const exact_occ_radius_scaling ("score:exact_occ_radius_scaling")
StringVectorOptionKey const ref_offsets ("score:ref_offsets")
BooleanOptionKey const output_residue_energies ("score:output_residue_energies")
StringOptionKey const fa_custom_pair_distance_file ("score:fa_custom_pair_distance_file")
RealOptionKey const disulf_matching_probe ("score:disulf_matching_probe")
RealVectorOptionKey const bonded_params ("score:bonded_params")
BooleanOptionKey const hb_sp2_chipen ("score:hb_sp2_chipen")
RealOptionKey const hb_sp2_amp ("score:hb_sp2_amp")
RealOptionKey const hb_sp2_peak_heigh_above_trough ("score:hb_sp2_peak_heigh_above_trough")
IntegerVectorOptionKey const sidechain_buried ("score:sidechain_buried")
IntegerVectorOptionKey const sidechain_exposed ("score:sidechain_exposed")
RealOptionKey const hackelec_max_dis ("score:hackelec_max_dis")
RealOptionKey const hackelec_die ("score:hackelec_die")
BooleanOptionKey const hackelec_r_option ("score:hackelec_r_option")

Function Documentation

RealVectorOptionKey const score::bonded_params ( "score:bonded_params"  )
StringOptionKey const score::custom_atom_pair ( "score:custom_atom_pair"  )
BooleanOptionKey const score::disable_orientation_dependent_rna_ch_o_bonds ( "score:disable_orientation_dependent_rna_ch_o_bonds"  )
RealOptionKey const score::disulf_matching_probe ( "score:disulf_matching_probe"  )
BooleanOptionKey const score::empty ( "score:empty"  )
RealOptionKey const score::etable_lr ( "score:etable_lr"  )
BooleanOptionKey const score::exact_occ_include_Hbond_contribution ( "score:exact_occ_include_Hbond_contribution"  )
BooleanOptionKey const score::exact_occ_pairwise ( "score:exact_occ_pairwise"  )
BooleanOptionKey const score::exact_occ_pairwise_by_res ( "score:exact_occ_pairwise_by_res"  )
RealOptionKey const score::exact_occ_radius_scaling ( "score:exact_occ_radius_scaling"  )
BooleanOptionKey const score::exact_occ_self_res_no_occ ( "score:exact_occ_self_res_no_occ"  )
BooleanOptionKey const score::exact_occ_skip_Hbonders ( "score:exact_occ_skip_Hbonders"  )
BooleanOptionKey const score::exact_occ_split_between_res ( "score:exact_occ_split_between_res"  )
StringOptionKey const score::fa_custom_pair_distance_file ( "score:fa_custom_pair_distance_file"  )
BooleanOptionKey const score::fa_Hatr ( "score:fa_Hatr"  )
RealOptionKey const score::fa_max_dis ( "score:fa_max_dis"  )

Referenced by main().

BooleanOptionKey const score::find_neighbors_3dgrid ( "score:find_neighbors_3dgrid"  )
RealOptionKey const score::hackelec_die ( "score:hackelec_die"  )
RealOptionKey const score::hackelec_max_dis ( "score:hackelec_max_dis"  )
BooleanOptionKey const score::hackelec_r_option ( "score:hackelec_r_option"  )
RealOptionKey const score::hb_sp2_amp ( "score:hb_sp2_amp"  )
BooleanOptionKey const score::hb_sp2_chipen ( "score:hb_sp2_chipen"  )
RealOptionKey const score::hb_sp2_peak_heigh_above_trough ( "score:hb_sp2_peak_heigh_above_trough"  )
StringOptionKey const score::hbond_params ( "score:hbond_params"  )
StringOptionKey const score::input_etables ( "score:input_etables"  )
BooleanOptionKey const score::no_lk_polar_desolvation ( "score:no_lk_polar_desolvation"  )
BooleanOptionKey const score::no_smooth_etables ( "score:no_smooth_etables"  )
RealOptionKey const score::NV_lbound ( "score:NV_lbound"  )
StringOptionKey const score::NV_table ( "score:NV_table"  )
RealOptionKey const score::NV_ubound ( "score:NV_ubound"  )
StringOptionKey const score::optH_patch ( "score:optH_patch"  )
StringOptionKey const score::optH_weights ( "score:optH_weights"  )
StringOptionKey const score::output_etables ( "score:output_etables"  )
BooleanOptionKey const score::output_residue_energies ( "score:output_residue_energies"  )
StringOptionKey const score::patch ( "score:patch"  )

Referenced by main().

BooleanOptionKey const score::ramaneighbors ( "score:ramaneighbors"  )
StringVectorOptionKey const score::ref_offsets ( "score:ref_offsets"  )
RealOptionKey const score::rms_target ( "score:rms_target"  )
BooleanOptionKey const score::score ( "score"  )
StringOptionKey const score::secondary_seqdep_refene_fname ( "score:secondary_seqdep_refene_fname"  )
StringOptionKey const score::seqdep_refene_fname ( "score:seqdep_refene_fname"  )
IntegerVectorOptionKey const score::sidechain_buried ( "score:sidechain_buried"  )
IntegerVectorOptionKey const score::sidechain_exposed ( "score:sidechain_exposed"  )
RealOptionKey const score::symE_bonus ( "score:symE_bonus"  )
IntegerOptionKey const score::symE_units ( "score:symE_units"  )
StringOptionKey const score::weights ( "score:weights"  )
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