Rosetta 3.3
Functions
relax Namespace Reference

Functions

BooleanOptionKey const relax ("relax")
BooleanOptionKey const fast ("relax:fast")
BooleanOptionKey const thorough ("relax:thorough")
BooleanOptionKey const membrane ("relax:membrane")
IntegerOptionKey const default_repeats ("relax:default_repeats")
BooleanOptionKey const ramady ("relax:ramady")
RealOptionKey const ramady_rms_limit ("relax:ramady_rms_limit")
RealOptionKey const ramady_cutoff ("relax:ramady_cutoff")
IntegerOptionKey const ramady_max_rebuild ("relax:ramady_max_rebuild")
BooleanOptionKey const ramady_force ("relax:ramady_force")
FileOptionKey const script ("relax:script")
IntegerOptionKey const script_max_accept ("relax:script_max_accept")
BooleanOptionKey const superimpose_to_native ("relax:superimpose_to_native")
FileOptionKey const superimpose_to_file ("relax:superimpose_to_file")
BooleanOptionKey const constrain_relax_to_native_coords ("relax:constrain_relax_to_native_coords")
BooleanOptionKey const constrain_relax_to_start_coords ("relax:constrain_relax_to_start_coords")
RealOptionKey const sc_cst_maxdist ("relax:sc_cst_maxdist")
BooleanOptionKey const limit_aroma_chi2 ("relax:limit_aroma_chi2")
BooleanOptionKey const bb_move ("relax:bb_move")
BooleanOptionKey const chi_move ("relax:chi_move")
BooleanOptionKey const jump_move ("relax:jump_move")
BooleanOptionKey const minimize_bond_lengths ("relax:minimize_bond_lengths")
BooleanOptionKey const minimize_bond_angles ("relax:minimize_bond_angles")
BooleanOptionKey const minimize_mainchain_bond_lengths ("relax:minimize_mainchain_bond_lengths")
BooleanOptionKey const minimize_mainchain_bond_angles ("relax:minimize_mainchain_bond_angles")
StringOptionKey const min_type ("relax:min_type")
BooleanOptionKey const cartesian ("relax:cartesian")
RealOptionKey const chainbreak_weight ("relax:chainbreak_weight")
RealOptionKey const linear_chainbreak_weight ("relax:linear_chainbreak_weight")
RealOptionKey const overlap_chainbreak_weight ("relax:overlap_chainbreak_weight")
BooleanOptionKey const classic ("relax:classic")
FileOptionKey const sequence_file ("relax:sequence_file")
BooleanOptionKey const quick ("relax:quick")
BooleanOptionKey const sequence ("relax:sequence")
IntegerOptionKey const minirelax_repeats ("relax:minirelax_repeats")
RealOptionKey const minirelax_sdev ("relax:minirelax_sdev")
BooleanOptionKey const wobblemoves ("relax:wobblemoves")
FileOptionKey const constrain_relax_segments ("relax:constrain_relax_segments")
RealOptionKey const coord_cst_width ("relax:coord_cst_width")
RealOptionKey const coord_cst_stdev ("relax:coord_cst_stdev")
BooleanOptionKey const ramp_constraints ("relax:ramp_constraints")
RealOptionKey const energycut ("relax:energycut")
BooleanOptionKey const mini ("relax:mini")
IntegerOptionKey const stage1_ramp_cycles ("relax:stage1_ramp_cycles")
IntegerOptionKey const stage1_ramp_inner_cycles ("relax:stage1_ramp_inner_cycles")
IntegerOptionKey const stage2_repack_period ("relax:stage2_repack_period")
IntegerOptionKey const stage2_cycles ("relax:stage2_cycles")
RealOptionKey const min_tolerance ("relax:min_tolerance")
IntegerOptionKey const stage3_cycles ("relax:stage3_cycles")
RealOptionKey const cycle_ratio ("relax:cycle_ratio")
RealOptionKey const filter_stage2_beginning ("relax:filter_stage2_beginning")
RealOptionKey const filter_stage2_quarter ("relax:filter_stage2_quarter")
RealOptionKey const filter_stage2_half ("relax:filter_stage2_half")
RealOptionKey const filter_stage2_end ("relax:filter_stage2_end")

Function Documentation

BooleanOptionKey const relax::bb_move ( "relax:bb_move"  )
BooleanOptionKey const relax::cartesian ( "relax:cartesian"  )
RealOptionKey const relax::chainbreak_weight ( "relax:chainbreak_weight"  )
BooleanOptionKey const relax::chi_move ( "relax:chi_move"  )
BooleanOptionKey const relax::classic ( "relax:classic"  )
FileOptionKey const relax::constrain_relax_segments ( "relax:constrain_relax_segments"  )
BooleanOptionKey const relax::constrain_relax_to_native_coords ( "relax:constrain_relax_to_native_coords"  )
BooleanOptionKey const relax::constrain_relax_to_start_coords ( "relax:constrain_relax_to_start_coords"  )
RealOptionKey const relax::coord_cst_stdev ( "relax:coord_cst_stdev"  )
RealOptionKey const relax::coord_cst_width ( "relax:coord_cst_width"  )
RealOptionKey const relax::cycle_ratio ( "relax:cycle_ratio"  )
IntegerOptionKey const relax::default_repeats ( "relax:default_repeats"  )
RealOptionKey const relax::energycut ( "relax:energycut"  )
BooleanOptionKey const relax::fast ( "relax:fast"  )

Referenced by main().

RealOptionKey const relax::filter_stage2_beginning ( "relax:filter_stage2_beginning"  )
RealOptionKey const relax::filter_stage2_end ( "relax:filter_stage2_end"  )
RealOptionKey const relax::filter_stage2_half ( "relax:filter_stage2_half"  )
RealOptionKey const relax::filter_stage2_quarter ( "relax:filter_stage2_quarter"  )
BooleanOptionKey const relax::jump_move ( "relax:jump_move"  )
BooleanOptionKey const relax::limit_aroma_chi2 ( "relax:limit_aroma_chi2"  )
RealOptionKey const relax::linear_chainbreak_weight ( "relax:linear_chainbreak_weight"  )
BooleanOptionKey const relax::membrane ( "relax:membrane"  )
RealOptionKey const relax::min_tolerance ( "relax:min_tolerance"  )
StringOptionKey const relax::min_type ( "relax:min_type"  )
BooleanOptionKey const relax::mini ( "relax:mini"  )

Referenced by main().

BooleanOptionKey const relax::minimize_bond_angles ( "relax:minimize_bond_angles"  )
BooleanOptionKey const relax::minimize_bond_lengths ( "relax:minimize_bond_lengths"  )
BooleanOptionKey const relax::minimize_mainchain_bond_angles ( "relax:minimize_mainchain_bond_angles"  )
BooleanOptionKey const relax::minimize_mainchain_bond_lengths ( "relax:minimize_mainchain_bond_lengths"  )
IntegerOptionKey const relax::minirelax_repeats ( "relax:minirelax_repeats"  )
RealOptionKey const relax::minirelax_sdev ( "relax:minirelax_sdev"  )
RealOptionKey const relax::overlap_chainbreak_weight ( "relax:overlap_chainbreak_weight"  )
BooleanOptionKey const relax::quick ( "relax:quick"  )
BooleanOptionKey const relax::ramady ( "relax:ramady"  )
RealOptionKey const relax::ramady_cutoff ( "relax:ramady_cutoff"  )
BooleanOptionKey const relax::ramady_force ( "relax:ramady_force"  )
IntegerOptionKey const relax::ramady_max_rebuild ( "relax:ramady_max_rebuild"  )
RealOptionKey const relax::ramady_rms_limit ( "relax:ramady_rms_limit"  )
BooleanOptionKey const relax::ramp_constraints ( "relax:ramp_constraints"  )
BooleanOptionKey const relax::relax ( "relax"  )
RealOptionKey const relax::sc_cst_maxdist ( "relax:sc_cst_maxdist"  )
FileOptionKey const relax::script ( "relax:script"  )
IntegerOptionKey const relax::script_max_accept ( "relax:script_max_accept"  )
BooleanOptionKey const relax::sequence ( "relax:sequence"  )
FileOptionKey const relax::sequence_file ( "relax:sequence_file"  )
IntegerOptionKey const relax::stage1_ramp_cycles ( "relax:stage1_ramp_cycles"  )
IntegerOptionKey const relax::stage1_ramp_inner_cycles ( "relax:stage1_ramp_inner_cycles"  )
IntegerOptionKey const relax::stage2_cycles ( "relax:stage2_cycles"  )
IntegerOptionKey const relax::stage2_repack_period ( "relax:stage2_repack_period"  )
IntegerOptionKey const relax::stage3_cycles ( "relax:stage3_cycles"  )
FileOptionKey const relax::superimpose_to_file ( "relax:superimpose_to_file"  )
BooleanOptionKey const relax::superimpose_to_native ( "relax:superimpose_to_native"  )
BooleanOptionKey const relax::thorough ( "relax:thorough"  )
BooleanOptionKey const relax::wobblemoves ( "relax:wobblemoves"  )
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