Rosetta 3.3
Classes | Typedefs | Functions | Variables
src/apps/public/interface_design/anchored_design/AnchorFinder.cc File Reference

This code is intended to sift through the entire Protein Data Bank and find PDBs that fit certain criteria; in this case having loops with large numbers of cross-interface neighbors. More...

#include <core/pose/Pose.hh>
#include <core/pose/PDBPoseMap.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/PointGraph.hh>
#include <core/conformation/find_neighbors.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/init.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/file/FileName.hh>
#include <utility/io/ozstream.hh>
#include <basic/options/keys/pose_metrics.OptionKeys.gen.hh>

Classes

class  AnchorFinderMover
 AnchorFinder mover. More...

Typedefs

typedef
utility::pointer::owning_ptr
< AnchorFinderMover
AnchorFinderMoverOP

Functions

int main (int argc, char *argv[])

Variables

static basic::Tracer TR ("apps.pilot.smlewis.AnchorFinder")
basic::options::IntegerOptionKey
const 
window_size ("window_size")
basic::options::RealOptionKey const loopness ("loopness")
basic::options::RealOptionKey const nbrs_per_residue ("nbrs_per_residue")
basic::options::StringOptionKey
const 
bestoutfile ("bestoutfile")

Detailed Description

This code is intended to sift through the entire Protein Data Bank and find PDBs that fit certain criteria; in this case having loops with large numbers of cross-interface neighbors.

Author:
Steven Lewis

Typedef Documentation


Function Documentation

int main ( int  argc,
char *  argv[] 
)

Variable Documentation

Referenced by AnchorFinderMover::apply(), and main().

Referenced by AnchorFinderMover::apply(), and main().

basic::Tracer TR("apps.pilot.smlewis.AnchorFinder") [static]

Referenced by AnchorFinderMover::apply(), and main().

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