Rosetta 3.3
Variables
basic::options::OptionKeys::loops Namespace Reference

Variables

BooleanOptionKey const loops
StringOptionKey const cen_weights
StringOptionKey const cen_patch
FileOptionKey const input_pdb
StringVectorOptionKey const loop_file
FileOptionKey const extended_loop_file
FileOptionKey const mm_loop_file
BooleanOptionKey const fix_natsc
BooleanOptionKey const refine_only
BooleanOptionKey const fa_input
BooleanOptionKey const fast
FileOptionKey const vall_file
IntegerVectorOptionKey const frag_sizes
FileVectorOptionKey const frag_files
FileOptionKey const output_pdb
BooleanOptionKey const debug
BooleanOptionKey const build_initial
BooleanOptionKey const extended
BooleanOptionKey const remove_extended_loops
BooleanOptionKey const idealize_after_loop_close
BooleanOptionKey const idealize_before_loop_close
IntegerOptionKey const select_best_loop_from
IntegerOptionKey const build_attempts
IntegerOptionKey const grow_attempts
RealOptionKey const random_grow_loops_by
BooleanOptionKey const accept_aborted_loops
BooleanOptionKey const strict_loops
BooleanOptionKey const superimpose_native
IntegerVectorOptionKey const build_specific_loops
BooleanOptionKey const random_order
BooleanOptionKey const build_all_loops
BooleanOptionKey const fa_closure_protocol
RealOptionKey const combine_rate
StringOptionKey const remodel
StringOptionKey const intermedrelax
StringOptionKey const refine
StringOptionKey const relax
IntegerOptionKey const n_rebuild_tries
BooleanOptionKey const final_clean_fastrelax
BooleanOptionKey const relax_with_foldtree
RealOptionKey const constrain_rigid_segments
StringOptionKey const loopscores
BooleanOptionKey const timer
BooleanOptionKey const vicinity_sampling
RealOptionKey const vicinity_degree
RealOptionKey const neighbor_dist
IntegerOptionKey const kic_max_seglen
BooleanOptionKey const kic_recover_last
BooleanOptionKey const kic_min_after_repack
BooleanOptionKey const optimize_only_kic_region_sidechains_after_move
IntegerOptionKey const max_kic_build_attempts
IntegerOptionKey const remodel_kic_attempts
IntegerOptionKey const max_kic_perturber_samples
BooleanOptionKey const nonpivot_torsion_sampling
IntegerOptionKey const extend_length
IntegerOptionKey const outer_cycles
IntegerOptionKey const max_inner_cycles
IntegerOptionKey const repack_period
BooleanOptionKey const repack_never
RealOptionKey const remodel_init_temp
RealOptionKey const remodel_final_temp
RealOptionKey const refine_init_temp
RealOptionKey const refine_final_temp
IntegerOptionKey const gapspan
IntegerOptionKey const spread
IntegerOptionKey const kinematic_wrapper_cycles
BooleanOptionKey const alternative_closure_protocol
RealOptionKey const chainbreak_max_accept
BooleanOptionKey const debug_loop_closure
BooleanOptionKey const non_ideal_loop_closing
RealOptionKey const scored_frag_cycles
RealOptionKey const short_frag_cycles
RealOptionKey const rmsd_tol
RealOptionKey const chain_break_tol
BooleanOptionKey const random_loop
FileVectorOptionKey const stealfrags
IntegerOptionKey const stealfrags_times
RealOptionKey const coord_cst
RealOptionKey const skip_1mers
RealOptionKey const skip_3mers
RealOptionKey const skip_9mers
BooleanOptionKey const loop_model
RealOptionKey const score_filter_cutoff
BooleanOptionKey const loop_farlx
BooleanOptionKey const ccd_closure
BooleanOptionKey const skip_ccd_moves
BooleanOptionKey const no_randomize_loop
BooleanOptionKey const loops_subset
IntegerOptionKey const num_desired_loops
RealOptionKey const loop_combine_rate
RealOptionKey const final_score_filter
BooleanOptionKey const no_combine_if_fail
BooleanOptionKey const shorten_long_terminal_loop
IntegerOptionKey const backrub_trials
RealOptionKey const looprlx_cycle_ratio
RealOptionKey const extended_beta
BooleanOptionKey const shortrelax
BooleanOptionKey const fastrelax
BooleanOptionKey const no_looprebuild
BooleanOptionKey const allow_lig_move
FileOptionKey const keep_natro
IntegerOptionKey const refine_design_iterations

Variable Documentation

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2(), and main().

Referenced by add_rosetta_options_2().

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Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

Referenced by add_rosetta_options_2().

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