Rosetta 3.3
Namespaces | Variables
basic::options::OptionKeys::optE Namespace Reference

Namespaces

namespace  rescore

Variables

BooleanOptionKey const optE
StringOptionKey const data_in
StringOptionKey const data_out
StringOptionKey const weights
StringVectorOptionKey const fix
FileOptionKey const free
FileOptionKey const fixed
FileOptionKey const parse_tagfile
FileOptionKey const constant_logic_taskops_file
BooleanOptionKey const optE_soft_rep
BooleanOptionKey const no_hb_env_dependence
BooleanOptionKey const no_hb_env_dependence_DNA
BooleanOptionKey const optE_no_protein_hack_elec
BooleanOptionKey const design_first
IntegerOptionKey const n_design_cycles
BooleanOptionKey const recover_nat_rot
FileOptionKey const component_weights
BooleanOptionKey const optimize_nat_aa
BooleanOptionKey const optimize_nat_rot
FileOptionKey const optimize_ligand_rot
BooleanOptionKey const optimize_pssm
FileOptionKey const optimize_dGbinding
FileOptionKey const optimize_ddG_bind_correlation
FileOptionKey const optimize_ddGmutation
BooleanOptionKey const optimize_ddGmutation_straight_mean
BooleanOptionKey const optimize_ddGmutation_boltzman_average
RealOptionKey const exclude_badrep_ddGs
BooleanOptionKey const pretend_no_ddG_repulsion
FileOptionKey const optimize_decoy_discrimination
StringOptionKey const normalize_decoy_score_spread
BooleanOptionKey const ramp_nativeness
IntegerOptionKey const n_top_natives_to_optimize
RealOptionKey const approximate_decoy_entropy
BooleanOptionKey const repack_and_minimize_decoys
BooleanOptionKey const repack_and_minimize_input_structures
IntegerOptionKey const output_top_n_new_decoys
FileOptionKey const optimize_ligand_discrimination
BooleanOptionKey const no_design
BooleanOptionKey const sqrt_pssm
RealOptionKey const min_decoy_rms_to_native
RealOptionKey const max_rms_from_native
BooleanOptionKey const optimize_starting_free_weights
FileOptionKey const wrap_dof_optimization
RealOptionKey const randomly_perturb_starting_free_weights
RealOptionKey const inv_kT_natrot
RealOptionKey const inv_kT_nataa
RealOptionKey const inv_kT_natstruct
BooleanOptionKey const mpi_weight_minimization
BooleanOptionKey const dont_use_reference_energies
IntegerOptionKey const number_of_swarm_particles
IntegerOptionKey const number_of_swarm_cycles
FileOptionKey const constrain_weights
BooleanOptionKey const fit_reference_energies_to_aa_profile_recovery
FileOptionKey const starting_refEs
BooleanOptionKey const repeat_swarm_optimization_until_fitness_improves
BooleanOptionKey const design_with_minpack

Variable Documentation

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

Referenced by add_rosetta_options_3().

 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines