Rosetta 3.3
Functions
out::file Namespace Reference

Functions

BooleanOptionKey const file ("out:file")
StringOptionKey const o ("out:file:o")
StringOptionKey const silent ("out:file:silent")
StringOptionKey const score_only ("out:file:score_only")
StringOptionKey const atom_tree_diff ("out:file:atom_tree_diff")
StringOptionKey const alignment ("out:file:alignment")
StringOptionKey const scorefile ("out:file:scorefile")
StringOptionKey const silent_struct_type ("out:file:silent_struct_type")
BooleanOptionKey const silent_preserve_H ("out:file:silent_preserve_H")
BooleanOptionKey const silent_print_all_score_headers ("out:file:silent_print_all_score_headers")
BooleanOptionKey const silent_decoytime ("out:file:silent_decoytime")
IntegerOptionKey const silent_comment_bound ("out:file:silent_comment_bound")
BooleanOptionKey const raw ("out:file:raw")
BooleanOptionKey const fullatom ("out:file:fullatom")
BooleanOptionKey const output_virtual ("out:file:output_virtual")
BooleanOptionKey const output_orbitals ("out:file:output_orbitals")
BooleanOptionKey const weight_silent_scores ("out:file:weight_silent_scores")
FileOptionKey const design_contrast ("out:file:design_contrast")
BooleanOptionKey const dont_rewrite_dunbrack_database ("out:file:dont_rewrite_dunbrack_database")
BooleanOptionKey const renumber_pdb ("out:file:renumber_pdb")
BooleanOptionKey const pdb_parents ("out:file:pdb_parents")
BooleanOptionKey const per_chain_renumbering ("out:file:per_chain_renumbering")
StringOptionKey const residue_type_set ("out:file:residue_type_set")
StringOptionKey const frag_prefix ("out:file:frag_prefix")
BooleanOptionKey const output_torsions ("out:file:output_torsions")

Function Documentation

StringOptionKey const out::file::alignment ( "out:file:alignment"  )
StringOptionKey const out::file::atom_tree_diff ( "out:file:atom_tree_diff"  )
FileOptionKey const out::file::design_contrast ( "out:file:design_contrast"  )

Referenced by main().

BooleanOptionKey const out::file::dont_rewrite_dunbrack_database ( "out:file:dont_rewrite_dunbrack_database"  )
BooleanOptionKey const out::file::file ( "out:file"  )
StringOptionKey const out::file::frag_prefix ( "out:file:frag_prefix"  )

Referenced by register_options().

BooleanOptionKey const out::file::fullatom ( "out:file:fullatom"  )

Referenced by basic::options::process().

StringOptionKey const out::file::o ( "out:file:o"  )
BooleanOptionKey const out::file::output_orbitals ( "out:file:output_orbitals"  )
BooleanOptionKey const out::file::output_torsions ( "out:file:output_torsions"  )
BooleanOptionKey const out::file::output_virtual ( "out:file:output_virtual"  )
BooleanOptionKey const out::file::pdb_parents ( "out:file:pdb_parents"  )
BooleanOptionKey const out::file::per_chain_renumbering ( "out:file:per_chain_renumbering"  )
BooleanOptionKey const out::file::raw ( "out:file:raw"  )
BooleanOptionKey const out::file::renumber_pdb ( "out:file:renumber_pdb"  )
StringOptionKey const out::file::residue_type_set ( "out:file:residue_type_set"  )

Referenced by main().

StringOptionKey const out::file::score_only ( "out:file:score_only"  )
StringOptionKey const out::file::scorefile ( "out:file:scorefile"  )

Referenced by distribute_jobs().

StringOptionKey const out::file::silent ( "out:file:silent"  )

Referenced by main(), and minimize_with_constraints().

IntegerOptionKey const out::file::silent_comment_bound ( "out:file:silent_comment_bound"  )
BooleanOptionKey const out::file::silent_decoytime ( "out:file:silent_decoytime"  )
BooleanOptionKey const out::file::silent_preserve_H ( "out:file:silent_preserve_H"  )
BooleanOptionKey const out::file::silent_print_all_score_headers ( "out:file:silent_print_all_score_headers"  )
StringOptionKey const out::file::silent_struct_type ( "out:file:silent_struct_type"  )

Referenced by ca_to_allatom_main(), and main().

BooleanOptionKey const out::file::weight_silent_scores ( "out:file:weight_silent_scores"  )
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