Rosetta 3.3
Namespaces | Functions
frags Namespace Reference

Namespaces

namespace  nonlocal
namespace  picking
namespace  scoring

Functions

BooleanOptionKey const frags ("frags")
BooleanOptionKey const filter_JC ("frags:filter_JC")
BooleanOptionKey const bounded_protocol ("frags:bounded_protocol")
BooleanOptionKey const keep_all_protocol ("frags:keep_all_protocol")
BooleanOptionKey const quota_protocol ("frags:quota_protocol")
BooleanOptionKey const p_value_selection ("frags:p_value_selection")
IntegerOptionKey const n_frags ("frags:n_frags")
FileOptionKey const allowed_pdb ("frags:allowed_pdb")
StringVectorOptionKey const ss_pred ("frags:ss_pred")
FileOptionKey const denied_pdb ("frags:denied_pdb")
IntegerVectorOptionKey const frag_sizes ("frags:frag_sizes")
BooleanOptionKey const write_ca_coordinates ("frags:write_ca_coordinates")
BooleanOptionKey const annotate ("frags:annotate")
IntegerOptionKey const nr_large_copies ("frags:nr_large_copies")
IntegerOptionKey const n_candidates ("frags:n_candidates")
BooleanOptionKey const write_rama_tables ("frags:write_rama_tables")
RealOptionKey const rama_C ("frags:rama_C")
RealOptionKey const rama_B ("frags:rama_B")
RealOptionKey const sigmoid_cs_A ("frags:sigmoid_cs_A")
RealOptionKey const sigmoid_cs_B ("frags:sigmoid_cs_B")
RealOptionKey const seqsim_H ("frags:seqsim_H")
RealOptionKey const seqsim_E ("frags:seqsim_E")
RealOptionKey const seqsim_L ("frags:seqsim_L")
RealOptionKey const rama_norm ("frags:rama_norm")
StringOptionKey const describe_fragments ("frags:describe_fragments")

Function Documentation

FileOptionKey const frags::allowed_pdb ( "frags:allowed_pdb"  )

Referenced by register_options().

BooleanOptionKey const frags::annotate ( "frags:annotate"  )
BooleanOptionKey const frags::bounded_protocol ( "frags:bounded_protocol"  )

Referenced by register_options().

FileOptionKey const frags::denied_pdb ( "frags:denied_pdb"  )

Referenced by register_options().

StringOptionKey const frags::describe_fragments ( "frags:describe_fragments"  )

Referenced by register_options().

BooleanOptionKey const frags::filter_JC ( "frags:filter_JC"  )
IntegerVectorOptionKey const frags::frag_sizes ( "frags:frag_sizes"  )

Referenced by register_options().

BooleanOptionKey const frags::frags ( "frags"  )
BooleanOptionKey const frags::keep_all_protocol ( "frags:keep_all_protocol"  )

Referenced by main(), and register_options().

IntegerOptionKey const frags::n_candidates ( "frags:n_candidates"  )

Referenced by register_options().

IntegerOptionKey const frags::n_frags ( "frags:n_frags"  )

Referenced by register_options().

IntegerOptionKey const frags::nr_large_copies ( "frags:nr_large_copies"  )
BooleanOptionKey const frags::p_value_selection ( "frags:p_value_selection"  )

Referenced by main().

BooleanOptionKey const frags::quota_protocol ( "frags:quota_protocol"  )

Referenced by main(), and register_options().

RealOptionKey const frags::rama_B ( "frags:rama_B"  )
RealOptionKey const frags::rama_C ( "frags:rama_C"  )
RealOptionKey const frags::rama_norm ( "frags:rama_norm"  )
RealOptionKey const frags::seqsim_E ( "frags:seqsim_E"  )
RealOptionKey const frags::seqsim_H ( "frags:seqsim_H"  )
RealOptionKey const frags::seqsim_L ( "frags:seqsim_L"  )
RealOptionKey const frags::sigmoid_cs_A ( "frags:sigmoid_cs_A"  )
RealOptionKey const frags::sigmoid_cs_B ( "frags:sigmoid_cs_B"  )
StringVectorOptionKey const frags::ss_pred ( "frags:ss_pred"  )

Referenced by register_options().

BooleanOptionKey const frags::write_ca_coordinates ( "frags:write_ca_coordinates"  )

Referenced by register_options().

BooleanOptionKey const frags::write_rama_tables ( "frags:write_rama_tables"  )
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