UBQ_E2Mover Class Reference

Inheritance diagram for UBQ_E2Mover:

Collaboration diagram for UBQ_E2Mover:

List of all members.

Public Member Functions
	UBQ_E2Mover ()
virtual void	init_on_new_input ()
	init_on_new_input system allows for initializing these details the first time apply() is called. the job distributor will reinitialize the whole mover when the input changes (a freshly constructed mover, which will re-run this on first apply().
virtual	~UBQ_E2Mover ()
virtual void	apply (core::pose::Pose &pose)
void	analyze_and_filter (core::pose::Pose &pose)
virtual protocols::moves::MoverOP	fresh_instance () const
virtual bool	reinitialize_for_each_job () const
virtual bool	reinitialize_for_new_input () const
virtual std::string	get_name () const

---

Constructor & Destructor Documentation

UBQ_E2Mover::UBQ_E2Mover

(

)

[inline]

References constraintweight, basic::options::option, basic::options::OptionKeys::frags::scoring::scoring, TR, and value.

Referenced by fresh_instance().

virtual UBQ_E2Mover::~UBQ_E2Mover

(

)

[inline, virtual]

---

Member Function Documentation

void UBQ_E2Mover::analyze_and_filter

(

core::pose::Pose &

pose

)

[inline]

References numeric::conversions::degrees(), basic::options::option, SASAfilter, basic::options::OptionKeys::AnchoredDesign::filters::score, scorefilter, TR, basic::MetricValue< T >::value(), and value.

Referenced by apply().

virtual void UBQ_E2Mover::apply

(

core::pose::Pose &

pose

)

[inline, virtual]

References analyze_and_filter(), basic::options::OptionKeys::AnchoredDesign::AnchoredDesign, color_pdb::i, init_on_new_input(), basic::options::OptionKeys::mc::mc, basic::options::OptionKeys::run::min_type, basic::options::OptionKeys::MonteCarlo::MonteCarlo, basic::options::option, option, PyMOL_demo::pose, basic::options::OptionKeys::AnchoredDesign::refine_cycles, basic::options::OptionKeys::AnchoredDesign::refine_repack_cycles, basic::options::OptionKeys::AnchoredDesign::refine_temp, TR, and value.

virtual protocols::moves::MoverOP UBQ_E2Mover::fresh_instance

(

)

const [inline, virtual]

References UBQ_E2Mover().

virtual std::string UBQ_E2Mover::get_name

(

)

const [inline, virtual]

virtual void UBQ_E2Mover::init_on_new_input

(

)

[inline, virtual]

init_on_new_input system allows for initializing these details the first time apply() is called. the job distributor will reinitialize the whole mover when the input changes (a freshly constructed mover, which will re-run this on first apply().

References basic::options::OptionKeys::constraints::constraints, E2_residue, E2pdb, end, color_pdb::i, basic::options::OptionKeys::loops::loop_file, basic::options::option, numeric::conversions::radians(), basic::options::OptionKeys::packing::resfile, basic::options::OptionKeys::in::file::residue_type_set, runtime_assert, TR, UBQpdb, basic::options::OptionKeys::mysql::user, and value.

Referenced by apply().

virtual bool UBQ_E2Mover::reinitialize_for_each_job

(

)

const [inline, virtual]

virtual bool UBQ_E2Mover::reinitialize_for_new_input

(

)

const [inline, virtual]

---

The documentation for this class was generated from the following file:

• src/apps/public/scenarios/UBQ_E2_thioester.cc