Rosetta 3.3
Namespaces | Typedefs | Functions
src/apps/public/rna/rna_database.cc File Reference
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rna/RNA_Util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <protocols/init.hh>
#include <core/io/pdb/pose_io.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <numeric/conversions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/rna/RNA_ProtocolUtil.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/Jump.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/format.hh>

Namespaces

namespace  ObjexxFCL
 

Objexx Fortran Compatibility Library.


namespace  ObjexxFCL::fmt

Typedefs

typedef numeric::xyzMatrix< Real > Matrix

Functions

void create_rna_vall_torsions_test ()
bool check_for_contacts (pose::Pose &pose, Size const i, Vector const &atom_j, Vector const dir_vector, char &edge_i, char &orientation)
void check_for_contacts_and_output_jump_o2star (pose::Pose &pose, Size const i, Size const j, utility::io::ozstream &dataout)
void check_for_contacts_and_output_jump_phosphate (pose::Pose &pose, Size const i, Size const j, utility::io::ozstream &dataout)
void create_bp_jump_database_test ()
void * my_main (void *)
int main (int argc, char *argv[])

Detailed Description


Typedef Documentation


Function Documentation

bool check_for_contacts ( pose::Pose &  pose,
Size const  i,
Vector const &  atom_j,
Vector const  dir_vector,
char &  edge_i,
char &  orientation 
)
void check_for_contacts_and_output_jump_o2star ( pose::Pose &  pose,
Size const  i,
Size const  j,
utility::io::ozstream dataout 
)
void check_for_contacts_and_output_jump_phosphate ( pose::Pose &  pose,
Size const  i,
Size const  j,
utility::io::ozstream dataout 
)
void create_bp_jump_database_test ( )
void create_rna_vall_torsions_test ( )
int main ( int  argc,
char *  argv[] 
)

References src::init(), my_main(), NEW_OPT, and options.

void* my_main ( void *  )
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