Rosetta 3.3
Namespaces | Functions
packing Namespace Reference

Namespaces

namespace  ex1
namespace  ex1aro
namespace  ex1aro_exposed
namespace  ex2
namespace  ex2aro
namespace  ex2aro_exposed
namespace  ex3
namespace  ex4
namespace  exdna

Functions

BooleanOptionKey const packing ("packing")
BooleanOptionKey const repack_only ("packing:repack_only")
BooleanOptionKey const prevent_repacking ("packing:prevent_repacking")
IntegerOptionKey const ndruns ("packing:ndruns")
BooleanOptionKey const soft_rep_design ("packing:soft_rep_design")
BooleanOptionKey const use_electrostatic_repulsion ("packing:use_electrostatic_repulsion")
BooleanOptionKey const dump_rotamer_sets ("packing:dump_rotamer_sets")
RealOptionKey const dunbrack_prob_buried ("packing:dunbrack_prob_buried")
RealOptionKey const dunbrack_prob_nonburied ("packing:dunbrack_prob_nonburied")
RealOptionKey const dunbrack_prob_nonburied_semirotameric ("packing:dunbrack_prob_nonburied_semirotameric")
BooleanOptionKey const no_optH ("packing:no_optH")
BooleanOptionKey const optH_MCA ("packing:optH_MCA")
BooleanOptionKey const pack_missing_sidechains ("packing:pack_missing_sidechains")
BooleanOptionKey const preserve_c_beta ("packing:preserve_c_beta")
BooleanOptionKey const flip_HNQ ("packing:flip_HNQ")
IntegerVectorOptionKey const fix_his_tautomer ("packing:fix_his_tautomer")
BooleanOptionKey const print_pymol_selection ("packing:print_pymol_selection")
IntegerOptionKey const extrachi_cutoff ("packing:extrachi_cutoff")
FileVectorOptionKey const resfile ("packing:resfile")
RealOptionKey const outeriterations_scaling ("packing:outeriterations_scaling")
RealOptionKey const inneriterations_scaling ("packing:inneriterations_scaling")
BooleanOptionKey const explicit_h2o ("packing:explicit_h2o")
StringVectorOptionKey const adducts ("packing:adducts")
BooleanOptionKey const solvate ("packing:solvate")
BooleanOptionKey const use_input_sc ("packing:use_input_sc")
FileVectorOptionKey const unboundrot ("packing:unboundrot")
RealOptionKey const max_rotbump_energy ("packing:max_rotbump_energy")
BooleanOptionKey const lazy_ig ("packing:lazy_ig")
BooleanOptionKey const double_lazy_ig ("packing:double_lazy_ig")
IntegerOptionKey const double_lazy_ig_mem_limit ("packing:double_lazy_ig_mem_limit")
IntegerOptionKey const linmem_ig ("packing:linmem_ig")
IntegerOptionKey const multi_cool_annealer ("packing:multi_cool_annealer")
RealVectorOptionKey const minpack_temp_schedule ("packing:minpack_temp_schedule")
IntegerOptionKey const minpack_inner_iteration_scale ("packing:minpack_inner_iteration_scale")
BooleanOptionKey const minpack_disable_bumpcheck ("packing:minpack_disable_bumpcheck")

Function Documentation

StringVectorOptionKey const packing::adducts ( "packing:adducts"  )
BooleanOptionKey const packing::double_lazy_ig ( "packing:double_lazy_ig"  )
IntegerOptionKey const packing::double_lazy_ig_mem_limit ( "packing:double_lazy_ig_mem_limit"  )
BooleanOptionKey const packing::dump_rotamer_sets ( "packing:dump_rotamer_sets"  )
RealOptionKey const packing::dunbrack_prob_buried ( "packing:dunbrack_prob_buried"  )
RealOptionKey const packing::dunbrack_prob_nonburied ( "packing:dunbrack_prob_nonburied"  )
RealOptionKey const packing::dunbrack_prob_nonburied_semirotameric ( "packing:dunbrack_prob_nonburied_semirotameric"  )
BooleanOptionKey const packing::explicit_h2o ( "packing:explicit_h2o"  )
IntegerOptionKey const packing::extrachi_cutoff ( "packing:extrachi_cutoff"  )

Referenced by main().

IntegerVectorOptionKey const packing::fix_his_tautomer ( "packing:fix_his_tautomer"  )
BooleanOptionKey const packing::flip_HNQ ( "packing:flip_HNQ"  )

Referenced by main().

RealOptionKey const packing::inneriterations_scaling ( "packing:inneriterations_scaling"  )
BooleanOptionKey const packing::lazy_ig ( "packing:lazy_ig"  )
IntegerOptionKey const packing::linmem_ig ( "packing:linmem_ig"  )
RealOptionKey const packing::max_rotbump_energy ( "packing:max_rotbump_energy"  )
BooleanOptionKey const packing::minpack_disable_bumpcheck ( "packing:minpack_disable_bumpcheck"  )
IntegerOptionKey const packing::minpack_inner_iteration_scale ( "packing:minpack_inner_iteration_scale"  )
RealVectorOptionKey const packing::minpack_temp_schedule ( "packing:minpack_temp_schedule"  )
IntegerOptionKey const packing::multi_cool_annealer ( "packing:multi_cool_annealer"  )
IntegerOptionKey const packing::ndruns ( "packing:ndruns"  )
BooleanOptionKey const packing::no_optH ( "packing:no_optH"  )

Referenced by main().

BooleanOptionKey const packing::optH_MCA ( "packing:optH_MCA"  )
RealOptionKey const packing::outeriterations_scaling ( "packing:outeriterations_scaling"  )
BooleanOptionKey const packing::pack_missing_sidechains ( "packing:pack_missing_sidechains"  )
BooleanOptionKey const packing::packing ( "packing"  )
BooleanOptionKey const packing::preserve_c_beta ( "packing:preserve_c_beta"  )
BooleanOptionKey const packing::prevent_repacking ( "packing:prevent_repacking"  )
BooleanOptionKey const packing::print_pymol_selection ( "packing:print_pymol_selection"  )
BooleanOptionKey const packing::repack_only ( "packing:repack_only"  )
FileVectorOptionKey const packing::resfile ( "packing:resfile"  )
BooleanOptionKey const packing::soft_rep_design ( "packing:soft_rep_design"  )
BooleanOptionKey const packing::solvate ( "packing:solvate"  )
FileVectorOptionKey const packing::unboundrot ( "packing:unboundrot"  )

Referenced by main().

BooleanOptionKey const packing::use_electrostatic_repulsion ( "packing:use_electrostatic_repulsion"  )
BooleanOptionKey const packing::use_input_sc ( "packing:use_input_sc"  )

Referenced by register_options().

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