src/apps/benchmark/scientific/design_contrast_and_statistic.cc File Reference

#include <fstream>
#include <iostream>
#include <cstdlib>
#include <basic/Tracer.hh>
#include <protocols/init.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/io/sequence_comparation/DesignContrast.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/moves/PackRotamersMover.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>

Functions
std::ostream &	writeYamlValue (std::ostream &S, std::string name, core::Real value)
std::ostream &	writeYamlValue (std::ostream &S, std::string name, bool value)
int	isHydroNonPolar (std::string const &resname)
int	isPolarUncharge (std::string const &resname)
int	isNegative (std::string const &resname)
int	isPositive (std::string const &resname)
int	isBoundary (Size const &neighbor)
int	isBuried (Size const &neighbor)
void	statistics (std::string filename)
int	main (int argc, char *argv[])
Variables
static basic::Tracer	TR ("apps.pilot.yiliu.DC")

---

Function Documentation

int isBoundary

(

Size const &

neighbor

)

Referenced by statistics().

int isBuried

(

Size const &

neighbor

)

Referenced by statistics().

int isHydroNonPolar

(

std::string const &

resname

)

Referenced by statistics().

int isNegative

(

std::string const &

resname

)

Referenced by statistics().

int isPolarUncharge

(

std::string const &

resname

)

Referenced by statistics().

int isPositive

(

std::string const &

resname

)

Referenced by statistics().

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::out::file::design_contrast, out::file::design_contrast(), color_pdb::i, src::init(), backrub::main_task_factory, option, packing::resfile(), backrub::score_fxn, statistics(), TR, and basic::options::OptionKeys::mysql::user.

void statistics

(

std::string

filename

)

References basic::Tracer::Error, ObjexxFCL::getline(), isBoundary(), isBuried(), isHydroNonPolar(), isNegative(), isPolarUncharge(), isPositive(), get_pdb::line, basic::options::OptionKeys::threadsc::nres, sum(), TR, and writeYamlValue().

Referenced by main().

std::ostream& writeYamlValue	(	std::ostream &	S,
		std::string	name,
		core::Real	value
	)

std::ostream& writeYamlValue	(	std::ostream &	S,
		std::string	name,
		bool	value
	)

---

Variable Documentation

basic::Tracer TR("apps.pilot.yiliu.DC") [static]