Rosetta 3.3
Functions | Variables
backrub Namespace Reference

Functions

BooleanOptionKey const backrub ("backrub")
IntegerVectorOptionKey const pivot_residues ("backrub:pivot_residues")
StringVectorOptionKey const pivot_atoms ("backrub:pivot_atoms")
IntegerOptionKey const min_atoms ("backrub:min_atoms")
IntegerOptionKey const max_atoms ("backrub:max_atoms")

Variables

tuple parser = optparse.OptionParser()
string help = "number of Monte Carlo trials to run"
list rosetta_args = [" ".join(sys.argv[:sys.argv.index("--")+1])]
tuple import_time_start = time.time()
tuple import_time_end = time.time()
tuple main_task_factory = core.pack.task.TaskFactory()
tuple score_fxn = core.scoring.getScoreFunction()
tuple energymethodoptions = score_fxn.energy_method_options()
tuple backrubmover = protocols.moves.BackrubMover()
tuple smallmover = protocols.moves.SmallMover()
tuple movemap = core.kinematics.MoveMap()
tuple sidechainmover = protocols.moves.SidechainMover()
tuple packrotamersmover = protocols.moves.PackRotamersMover()
tuple input_jobs = protocols.jobdist.load_s_and_l()
 custom_fold_tree = False
tuple input_pose = core.pose.Pose()

Function Documentation

BooleanOptionKey const backrub::backrub ( "backrub"  )
IntegerOptionKey const backrub::max_atoms ( "backrub:max_atoms"  )

Referenced by main().

IntegerOptionKey const backrub::min_atoms ( "backrub:min_atoms"  )

Referenced by main().

StringVectorOptionKey const backrub::pivot_atoms ( "backrub:pivot_atoms"  )

Referenced by main(), and my_main().

IntegerVectorOptionKey const backrub::pivot_residues ( "backrub:pivot_residues"  )

Referenced by main().


Variable Documentation

tuple backrub::backrubmover = protocols.moves.BackrubMover()

Referenced by my_main().

Referenced by my_main().

tuple backrub::energymethodoptions = score_fxn.energy_method_options()

Referenced by my_main().

string backrub::help = "number of Monte Carlo trials to run"
tuple backrub::import_time_end = time.time()
tuple backrub::import_time_start = time.time()
tuple backrub::input_jobs = protocols.jobdist.load_s_and_l()
tuple backrub::input_pose = core.pose.Pose()
tuple backrub::main_task_factory = core.pack.task.TaskFactory()

Referenced by main(), and my_main().

tuple backrub::movemap = core.kinematics.MoveMap()
tuple backrub::packrotamersmover = protocols.moves.PackRotamersMover()

Referenced by my_main().

tuple backrub::parser = optparse.OptionParser()
list backrub::rosetta_args = [" ".join(sys.argv[:sys.argv.index("--")+1])]
tuple backrub::score_fxn = core.scoring.getScoreFunction()

Referenced by main(), and my_main().

tuple backrub::sidechainmover = protocols.moves.SidechainMover()

Referenced by my_main().

tuple backrub::smallmover = protocols.moves.SmallMover()

Referenced by my_main().

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